Analysis of interatomic Contacts of Structural Units in PDB entry:
4JIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JIP entry

There is 1 chain in PDB entry 4JIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLN 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4JIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 33Right-handed 310
Helix 2
2
A
35 44Right-handed alpha
Helix 3
3
A
73 90Right-handed alpha
Helix 4
4
A
106 114Right-handed 310
Helix 5
5
A
149 170Right-handed alpha
Helix 6
6
A
183 190Right-handed alpha
Helix 7
7
A
203 223Right-handed alpha
Helix 8
8
A
236 240Right-handed 310
Helix 9
9
A
244 257Right-handed alpha
Helix 10
10
A
285 296Right-handed alpha
Helix 11
11
A
309 319Right-handed alpha
Helix 12
12
A
328 334Right-handed alpha
Helix 13
13
A
336 343Right-handed alpha
Helix 14
14
A
351 355Right-handed 310
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There are 4 sheets in PDB entry 4JIP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
13 15anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
50 57parallel
Strand 3
A
94 99parallel
Strand 4
A
174 178parallel
Strand 5
A
227 231parallel
Strand 6
A
263 267parallel
Strand 7
A
301 305parallel
Strand 8
A
324 327parallel
Strand 9
A
19 21parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
146 147parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
137 141anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il