Analysis of interatomic Contacts of Structural Units in PDB entry:
4JIS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JIS entry

There are 2 chains in PDB entry 4JIS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LEU 231
B
 GLY 0ILE 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4JIS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 24Right-handed 310
Helix 2
2
A
32 42Right-handed alpha
Helix 3
3
A
54 56Right-handed 310
Helix 4
4
A
57 69Right-handed alpha
Helix 5
5
A
83 99Right-handed alpha
Helix 6
6
A
118 133Right-handed alpha
Helix 7
7
A
174 184Right-handed alpha
Helix 8
8
A
194 202Right-handed alpha
Helix 9
9
A
220 231Right-handed alpha
Helix 10
10
B
21 24Right-handed 310
Helix 11
11
B
32 42Right-handed alpha
Helix 12
12
B
54 56Right-handed 310
Helix 13
13
B
57 69Right-handed alpha
Helix 14
14
B
83 99Right-handed alpha
Helix 15
15
B
118 133Right-handed alpha
Helix 16
16
B
174 182Right-handed alpha
Helix 17
17
B
185 192Right-handed alpha
Helix 18
18
B
194 201Right-handed alpha
Helix 19
19
B
222 230Right-handed alpha
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There are 6 sheets in PDB entry 4JIS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
48 53parallel
Strand 3
A
2 7parallel
Strand 4
A
106 111parallel
Strand 5
A
163 173anti-parallel
Strand 6
A
134 140anti-parallel
Strand 7
A
207 210parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
48 53parallel
Strand 3
A
2 7parallel
Strand 4
A
106 111parallel
Strand 5
A
163 173anti-parallel
Strand 6
B
145 147anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
30 31anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
B
163 173anti-parallel
Strand 3
B
106 111anti-parallel
Strand 4
B
2 7parallel
Strand 5
B
48 53parallel
Strand 6
B
75 79parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
B
163 173anti-parallel
Strand 3
B
134 140anti-parallel
Strand 4
B
207 210parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
30 31anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il