Analysis of interatomic Contacts of Structural Units in PDB entry:
4JIT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JIT entry

There are 4 chains in PDB entry 4JIT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3GLY 151
B
 GLU 3ARG 152
C
 GLU 3ARG 152
D
 GLU 3ARG 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4JIT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 22Right-handed alpha
Helix 2
2
A
23 24Right-handed 310
Helix 3
3
A
25 29Right-handed 310
Helix 4
4
A
39 51Right-handed alpha
Helix 5
5
A
94 104Right-handed alpha
Helix 6
6
A
116 122Right-handed 310
Helix 7
7
A
137 139Right-handed 310
Helix 8
8
B
8 23Right-handed alpha
Helix 9
9
B
24 29Right-handed 310
Helix 10
10
B
39 50Right-handed alpha
Helix 11
11
B
94 104Right-handed alpha
Helix 12
12
B
118 122Right-handed 310
Helix 13
13
B
137 139Right-handed 310
Helix 14
14
C
8 23Right-handed alpha
Helix 15
15
C
39 50Right-handed alpha
Helix 16
16
C
94 104Right-handed alpha
Helix 17
17
C
118 122Right-handed 310
Helix 18
18
C
137 139Right-handed 310
Helix 19
19
D
8 23Right-handed alpha
Helix 20
20
D
25 29Right-handed 310
Helix 21
21
D
39 50Right-handed alpha
Helix 22
22
D
94 104Right-handed alpha
Helix 23
23
D
118 122Right-handed 310
Helix 24
24
D
137 139Right-handed 310
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There are 10 sheets in PDB entry 4JIT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
134 136parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 75first strand
Strand 2
A
55 65anti-parallel
Strand 3
A
31 36parallel
Strand 4
A
84 91parallel
Strand 5
A
108 114parallel
Strand 6
A
127 128parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
D
141 145anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
134 136parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 75first strand
Strand 2
B
55 65anti-parallel
Strand 3
B
31 36parallel
Strand 4
B
84 91parallel
Strand 5
B
108 114parallel
Strand 6
B
127 128parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 145first strand
Strand 2
C
141 145anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
135 136parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 75first strand
Strand 2
C
55 65anti-parallel
Strand 3
C
31 36parallel
Strand 4
C
84 91parallel
Strand 5
C
108 114parallel
Strand 6
C
127 128parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 6first strand
Strand 2
D
135 136parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
73 75first strand
Strand 2
D
55 60anti-parallel
Strand 3
D
31 35parallel
Strand 4
D
84 91parallel
Strand 5
D
108 114parallel
Strand 6
D
127 128parallel
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