Analysis of interatomic Contacts of Structural Units in PDB entry:
4JIV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JIV entry

There are 4 chains in PDB entry 4JIV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 483ASN 575
B
 SER 483ASN 575
C
 SER 483ASN 575
D
 GLY 2GLY 94
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 4JIV

There are 5 sheets in PDB entry 4JIV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 490first strand
Strand 2
B
494 498parallel
Strand 3
C
502 506parallel
Strand 4
A
510 514parallel
Strand 5
B
518 522parallel
Strand 6
C
526 530parallel
Strand 7
A
534 538parallel
Strand 8
B
542 546parallel
Strand 9
C
549 554parallel
Strand 10
A
556 561parallel
Strand 11
B
564 568parallel
Strand 12
C
571 574parallel
Strand 13
D
65 67parallel
Strand 14
D
70 71anti-parallel
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There are 14 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
486 490first strand
Strand 2
A
494 498parallel
Strand 3
B
502 506parallel
Strand 4
C
510 514parallel
Strand 5
A
518 522parallel
Strand 6
B
526 530parallel
Strand 7
C
534 538parallel
Strand 8
A
542 546parallel
Strand 9
B
549 554parallel
Strand 10
C
556 561parallel
Strand 11
A
564 568parallel
Strand 12
B
571 574parallel
Strand 13
D
29 31parallel
Strand 14
D
34 35anti-parallel
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There are 13 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 490first strand
Strand 2
C
494 498parallel
Strand 3
A
502 506parallel
Strand 4
B
510 514parallel
Strand 5
C
518 522parallel
Strand 6
A
526 530parallel
Strand 7
B
534 538parallel
Strand 8
C
542 546parallel
Strand 9
A
549 554parallel
Strand 10
B
556 561parallel
Strand 11
C
565 568parallel
Strand 12
A
572 574parallel
Strand 13
D
91 93parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 21first strand
Strand 2
D
10 11anti-parallel
Strand 3
D
85 86anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 48first strand
Strand 2
D
51 57anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il