Analysis of interatomic Contacts of Structural Units in PDB entry:
4JIW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JIW entry

There are 15 chains in PDB entry 4JIW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 483	ASN 575
B	SER 483	ASN 575
C	SER 483	ASN 575
D	PRO 2	GLY 94
E	SER 483	ASN 575
F	SER 483	ASN 575
G	SER 483	ASN 575
H	PRO 2	GLY 94
I	SER 483	ASN 575
J	SER 483	ASN 575
K	SER 483	ASN 575
L	PRO 2	GLY 94
M	SER 483	ASN 575
N	SER 483	ASN 575
O	SER 483	TRP 550

There are no helices in PDB entry 4JIW

There are 20 sheets in PDB entry 4JIW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	B	495	498	parallel
Strand 3	C	502	506	parallel
Strand 4	A	510	513	parallel
Strand 5	B	518	522	parallel
Strand 6	C	526	530	parallel
Strand 7	A	534	538	parallel
Strand 8	B	542	545	parallel
Strand 9	C	549	554	parallel
Strand 10	A	556	561	parallel
Strand 11	B	564	568	parallel
Strand 12	C	571	574	parallel
Strand 13	D	65	67	parallel
Strand 14	D	70	71	anti-parallel

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There are 14 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	490	first strand
Strand 2	A	494	498	parallel
Strand 3	B	502	506	parallel
Strand 4	C	510	514	parallel
Strand 5	A	518	522	parallel
Strand 6	B	526	530	parallel
Strand 7	C	534	538	parallel
Strand 8	A	542	546	parallel
Strand 9	B	549	554	parallel
Strand 10	C	556	561	parallel
Strand 11	A	564	568	parallel
Strand 12	B	571	574	parallel
Strand 13	D	29	31	parallel
Strand 14	D	34	35	anti-parallel

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There are 13 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	490	first strand
Strand 2	C	494	498	parallel
Strand 3	A	502	506	parallel
Strand 4	B	510	514	parallel
Strand 5	C	518	522	parallel
Strand 6	A	527	530	parallel
Strand 7	B	534	538	parallel
Strand 8	C	542	546	parallel
Strand 9	A	549	554	parallel
Strand 10	B	556	561	parallel
Strand 11	C	565	568	parallel
Strand 12	A	572	574	parallel
Strand 13	D	91	93	parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	10	11	anti-parallel
Strand 3	D	85	86	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	54	57	anti-parallel

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There are 14 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	487	490	first strand
Strand 2	F	494	498	parallel
Strand 3	G	502	506	parallel
Strand 4	E	510	514	parallel
Strand 5	F	518	522	parallel
Strand 6	G	526	530	parallel
Strand 7	E	534	538	parallel
Strand 8	F	542	546	parallel
Strand 9	G	550	554	parallel
Strand 10	E	557	561	parallel
Strand 11	F	564	568	parallel
Strand 12	G	571	574	parallel
Strand 13	H	65	67	parallel
Strand 14	H	70	71	anti-parallel

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There are 14 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	486	490	first strand
Strand 2	E	494	498	parallel
Strand 3	F	502	506	parallel
Strand 4	G	510	514	parallel
Strand 5	E	518	522	parallel
Strand 6	F	526	530	parallel
Strand 7	G	534	538	parallel
Strand 8	E	542	546	parallel
Strand 9	F	549	554	parallel
Strand 10	G	556	561	parallel
Strand 11	E	564	568	parallel
Strand 12	F	571	574	parallel
Strand 13	H	29	31	parallel
Strand 14	H	34	35	anti-parallel

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There are 13 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	486	490	first strand
Strand 2	G	494	498	parallel
Strand 3	E	502	506	parallel
Strand 4	F	510	514	parallel
Strand 5	G	518	522	parallel
Strand 6	E	526	530	parallel
Strand 7	F	534	538	parallel
Strand 8	G	542	545	parallel
Strand 9	E	549	554	parallel
Strand 10	F	556	561	parallel
Strand 11	G	564	568	parallel
Strand 12	E	571	574	parallel
Strand 13	H	91	93	parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	21	first strand
Strand 2	H	10	11	anti-parallel
Strand 3	H	85	86	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	48	first strand
Strand 2	H	51	57	anti-parallel

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There are 14 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	486	490	first strand
Strand 2	J	494	498	parallel
Strand 3	K	502	506	parallel
Strand 4	I	510	514	parallel
Strand 5	J	518	522	parallel
Strand 6	K	526	530	parallel
Strand 7	I	534	538	parallel
Strand 8	J	542	546	parallel
Strand 9	K	549	554	parallel
Strand 10	I	556	561	parallel
Strand 11	J	564	568	parallel
Strand 12	K	571	574	parallel
Strand 13	L	65	67	parallel
Strand 14	L	70	71	anti-parallel

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There are 14 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	488	490	first strand
Strand 2	I	494	498	parallel
Strand 3	J	502	506	parallel
Strand 4	K	510	514	parallel
Strand 5	I	518	522	parallel
Strand 6	J	526	530	parallel
Strand 7	K	534	538	parallel
Strand 8	I	542	546	parallel
Strand 9	J	549	554	parallel
Strand 10	K	556	561	parallel
Strand 11	I	564	568	parallel
Strand 12	J	571	574	parallel
Strand 13	L	29	31	parallel
Strand 14	L	34	35	anti-parallel

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There are 13 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	487	490	first strand
Strand 2	K	494	498	parallel
Strand 3	I	502	506	parallel
Strand 4	J	510	514	parallel
Strand 5	K	518	522	parallel
Strand 6	I	526	530	parallel
Strand 7	J	534	538	parallel
Strand 8	K	542	546	parallel
Strand 9	I	549	554	parallel
Strand 10	J	556	561	parallel
Strand 11	K	564	568	parallel
Strand 12	I	571	574	parallel
Strand 13	L	91	93	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	20	21	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	46	first strand
Strand 2	L	54	57	anti-parallel

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There are 14 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	487	490	first strand
Strand 2	N	494	498	parallel
Strand 3	O	502	506	parallel
Strand 4	M	510	514	parallel
Strand 5	N	518	522	parallel
Strand 6	O	526	530	parallel
Strand 7	M	534	538	parallel
Strand 8	N	542	546	parallel
Strand 9	O	549	554	parallel
Strand 10	M	556	561	parallel
Strand 11	N	564	568	parallel
Strand 12	O	571	574	parallel
Strand 13	P	65	67	parallel
Strand 14	P	70	71	anti-parallel

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There are 14 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	487	490	first strand
Strand 2	M	494	498	parallel
Strand 3	N	502	506	parallel
Strand 4	O	510	514	parallel
Strand 5	M	518	522	parallel
Strand 6	N	526	530	parallel
Strand 7	O	534	538	parallel
Strand 8	M	542	545	parallel
Strand 9	N	550	554	parallel
Strand 10	O	557	561	parallel
Strand 11	M	564	568	parallel
Strand 12	N	571	574	parallel
Strand 13	P	29	31	parallel
Strand 14	P	34	35	anti-parallel

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There are 13 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	487	490	first strand
Strand 2	O	495	498	parallel
Strand 3	M	502	506	parallel
Strand 4	N	510	514	parallel
Strand 5	O	518	522	parallel
Strand 6	M	526	530	parallel
Strand 7	N	534	538	parallel
Strand 8	O	542	546	parallel
Strand 9	M	549	554	parallel
Strand 10	N	556	561	parallel
Strand 11	O	564	568	parallel
Strand 12	M	571	574	parallel
Strand 13	P	91	93	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	11	first strand
Strand 2	P	20	21	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	42	46	first strand
Strand 2	P	54	57	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JIW

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JIW