Analysis of interatomic Contacts of Structural Units in PDB entry:
4JJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JJ3 entry

There are 2 chains in PDB entry 4JJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 80GLN 260
B
 PHE 82ILE 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4JJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
103 110Right-handed alpha
Helix 2
2
A
125 131Right-handed alpha
Helix 3
3
A
149 160Right-handed alpha
Helix 4
4
A
211 215Right-handed 310
Helix 5
5
A
227 231Right-handed 310
Helix 6
6
B
103 110Right-handed alpha
Helix 7
7
B
126 131Right-handed alpha
Helix 8
8
B
149 160Right-handed alpha
Helix 9
9
B
211 215Right-handed 310
Helix 10
10
B
227 231Right-handed 310
Helix 11
11
B
251 255Right-handed 310
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There are 6 sheets in PDB entry 4JJ3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
218 219anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
138 142anti-parallel
Strand 3
A
165 172anti-parallel
Strand 4
A
175 182anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
138 142anti-parallel
Strand 3
A
119 124anti-parallel
Strand 4
A
97 101anti-parallel
Strand 5
A
91 94anti-parallel
Strand 6
A
191 193anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
258 259parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
137 142anti-parallel
Strand 3
B
165 172anti-parallel
Strand 4
B
175 182anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
137 142anti-parallel
Strand 3
B
119 124anti-parallel
Strand 4
B
97 101anti-parallel
Strand 5
B
91 94anti-parallel
Strand 6
B
191 193anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il