Analysis of interatomic Contacts of Structural Units in PDB entry:
4JJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JJ9 entry

There are 3 chains in PDB entry 4JJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL -11PHE 140
B
 ASN -5LYS 145
C
 TYR -3GLN 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4JJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-5 0Right-handed 310
Helix 2
2
A
11 15Right-handed 310
Helix 3
3
A
17 30Right-handed alpha
Helix 4
4
A
42 45Right-handed 310
Helix 5
5
A
62 68Right-handed alpha
Helix 6
6
A
88 114Right-handed alpha
Helix 7
7
A
136 140Right-handed 310
Helix 8
8
B
11 14Right-handed 310
Helix 9
9
B
17 31Right-handed alpha
Helix 10
10
B
62 68Right-handed alpha
Helix 11
11
B
88 114Right-handed alpha
Helix 12
12
B
135 141Right-handed 310
Helix 13
13
C
11 16Right-handed 310
Helix 14
14
C
17 31Right-handed alpha
Helix 15
15
C
42 45Right-handed 310
Helix 16
16
C
62 68Right-handed alpha
Helix 17
17
C
88 112Right-handed alpha
Helix 18
18
C
136 141Right-handed 310
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There are 3 sheets in PDB entry 4JJ9. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
A
47 53anti-parallel
Strand 3
A
3 9parallel
Strand 4
A
75 83anti-parallel
Strand 5
A
116 124parallel
Strand 6
C
129 132anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
C
47 53anti-parallel
Strand 3
C
3 9parallel
Strand 4
C
75 83anti-parallel
Strand 5
C
116 124parallel
Strand 6
B
129 132anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
B
116 124anti-parallel
Strand 3
B
75 83parallel
Strand 4
B
3 9anti-parallel
Strand 5
B
47 53parallel
Strand 6
C
55 58anti-parallel
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