Analysis of interatomic Contacts of Structural Units in PDB entry:
4JJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JJA entry

There is 1 chain in PDB entry 4JJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 22ASN 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4JJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 29Right-handed 310
Helix 2
2
A
30 39Right-handed alpha
Helix 3
3
A
58 65Right-handed alpha
Helix 4
4
A
113 118Right-handed alpha
Helix 5
5
A
136 151Right-handed alpha
Helix 6
6
A
174 178Right-handed 310
Helix 7
7
A
193 204Right-handed alpha
Helix 8
8
A
207 211Right-handed 310
Helix 9
9
A
241 252Right-handed alpha
Helix 10
10
A
253 257Right-handed 310
Helix 11
11
A
311 319Right-handed alpha
Helix 12
12
A
322 333Right-handed alpha
Helix 13
13
A
334 339Right-handed 310
Helix 14
14
A
340 341Right-handed 310
Helix 15
15
A
342 348Right-handed alpha
Helix 16
16
A
350 358Right-handed alpha
Helix 17
17
A
361 369Right-handed alpha
Helix 18
18
A
369 381Right-handed alpha
Helix 19
19
A
382 384Right-handed 310
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There are 3 sheets in PDB entry 4JJA. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
68 74parallel
Strand 3
A
42 46parallel
Strand 4
A
122 125parallel
Strand 5
A
154 158parallel
Strand 6
A
215 218parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
56 57anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 274first strand
Strand 2
A
302 306anti-parallel
Strand 3
A
283 284anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il