Analysis of interatomic Contacts of Structural Units in PDB entry:
4JJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JJF entry

There are 2 chains in PDB entry 4JJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 344
B
 MET 1LYS 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 4JJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 17Right-handed alpha
Helix 2
2
A
22 32Right-handed alpha
Helix 3
3
A
34 40Right-handed 310
Helix 4
4
A
41 54Right-handed alpha
Helix 5
5
A
64 68Right-handed 310
Helix 6
6
A
77 88Right-handed alpha
Helix 7
7
A
89 91Right-handed 310
Helix 8
8
A
92 107Right-handed alpha
Helix 9
9
A
119 124Right-handed 310
Helix 10
10
A
130 136Right-handed alpha
Helix 11
11
A
149 157Right-handed alpha
Helix 12
12
A
158 162Right-handed 310
Helix 13
13
A
175 186Right-handed alpha
Helix 14
14
A
193 197Right-handed 310
Helix 15
15
A
222 238Right-handed alpha
Helix 16
16
A
245 253Right-handed alpha
Helix 17
17
A
255 277Right-handed alpha
Helix 18
18
A
280 303Right-handed alpha
Helix 19
19
A
304 307Right-handed 310
Helix 20
20
A
312 315Right-handed 310
Helix 21
21
A
316 321Right-handed alpha
Helix 22
22
A
322 324Right-handed 310
Helix 23
23
A
325 330Right-handed 310
Helix 24
24
A
331 343Right-handed alpha
Helix 25
25
B
11 18Right-handed alpha
Helix 26
26
B
22 33Right-handed alpha
Helix 27
27
B
34 40Right-handed 310
Helix 28
28
B
41 53Right-handed alpha
Helix 29
29
B
64 68Right-handed 310
Helix 30
30
B
77 88Right-handed alpha
Helix 31
31
B
89 91Right-handed 310
Helix 32
32
B
92 107Right-handed alpha
Helix 33
33
B
119 124Right-handed 310
Helix 34
34
B
130 136Right-handed alpha
Helix 35
35
B
149 159Right-handed alpha
Helix 36
36
B
160 162Right-handed 310
Helix 37
37
B
175 185Right-handed alpha
Helix 38
38
B
193 197Right-handed 310
Helix 39
39
B
222 238Right-handed alpha
Helix 40
40
B
247 253Right-handed alpha
Helix 41
41
B
255 276Right-handed alpha
Helix 42
42
B
280 303Right-handed alpha
Helix 43
43
B
306 311Right-handed alpha
Helix 44
44
B
312 315Right-handed 310
Helix 45
45
B
316 321Right-handed alpha
Helix 46
46
B
322 324Right-handed 310
Helix 47
47
B
325 330Right-handed 310
Helix 48
48
B
331 343Right-handed alpha
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There are 6 sheets in PDB entry 4JJF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
58 62parallel
Strand 3
A
2 6parallel
Strand 4
A
140 143parallel
Strand 5
A
167 170parallel
Strand 6
A
198 201parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
113 116parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 218first strand
Strand 2
A
240 244parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 128first strand
Strand 2
B
58 62parallel
Strand 3
B
2 6parallel
Strand 4
B
140 143parallel
Strand 5
B
167 170parallel
Strand 6
B
198 201parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
113 116parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 218first strand
Strand 2
B
240 244parallel
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