Analysis of interatomic Contacts of Structural Units in PDB entry:
4JJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JJJ entry

There is 1 chain in PDB entry 4JJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1GLY 638
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4JJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 15Right-handed alpha
Helix 2
2
A
16 19Right-handed 310
Helix 3
3
A
50 68Right-handed alpha
Helix 4
4
A
70 84Right-handed alpha
Helix 5
5
A
93 97Right-handed 310
Helix 6
6
A
111 115Right-handed 310
Helix 7
7
A
130 139Right-handed alpha
Helix 8
8
A
203 206Right-handed 310
Helix 9
9
A
222 243Right-handed alpha
Helix 10
10
A
245 248Right-handed 310
Helix 11
11
A
249 264Right-handed alpha
Helix 12
12
A
265 268Right-handed 310
Helix 13
13
A
288 293Right-handed 310
Helix 14
14
A
325 327Right-handed 310
Helix 15
15
A
328 338Right-handed alpha
Helix 16
16
A
347 366Right-handed alpha
Helix 17
17
A
380 384Right-handed 310
Helix 18
18
A
415 433Right-handed alpha
Helix 19
19
A
434 451Right-handed alpha
Helix 20
20
A
455 459Right-handed 310
Helix 21
21
A
498 517Right-handed alpha
Helix 22
22
A
518 534Right-handed alpha
Helix 23
23
A
549 554Right-handed 310
Helix 24
24
A
588 594Right-handed 310
Helix 25
25
A
596 605Right-handed alpha
Helix 26
26
A
619 638Right-handed alpha
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There are 7 sheets in PDB entry 4JJJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 24first strand
Strand 2
A
27 30anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
149 151anti-parallel
Strand 3
A
170 173anti-parallel
Strand 4
A
189 190anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
208 209parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
216 220anti-parallel
Strand 3
A
302 306anti-parallel
Strand 4
A
314 317anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 323first strand
Strand 2
A
376 378anti-parallel
Strand 3
A
398 401anti-parallel
Strand 4
A
394 395anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 473first strand
Strand 2
A
488 496anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 571first strand
Strand 2
A
577 578anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il