Analysis of interatomic Contacts of Structural Units in PDB entry:
4JKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JKJ entry

There are 2 chains in PDB entry 4JKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 223
B
 MET 1ALA 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4JKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
35 39Right-handed 310
Helix 3
3
A
56 71Right-handed alpha
Helix 4
4
A
89 101Right-handed alpha
Helix 5
5
A
112 121Right-handed alpha
Helix 6
6
A
125 135Right-handed alpha
Helix 7
7
A
136 148Right-handed alpha
Helix 8
8
A
189 191Right-handed 310
Helix 9
9
A
192 208Right-handed alpha
Helix 10
10
B
9 20Right-handed alpha
Helix 11
11
B
35 39Right-handed 310
Helix 12
12
B
56 69Right-handed alpha
Helix 13
13
B
89 101Right-handed alpha
Helix 14
14
B
112 121Right-handed alpha
Helix 15
15
B
122 124Right-handed 310
Helix 16
16
B
125 135Right-handed alpha
Helix 17
17
B
136 148Right-handed alpha
Helix 18
18
B
192 206Right-handed alpha
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There are 4 sheets in PDB entry 4JKJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
107 108anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
215 221anti-parallel
Strand 3
A
46 54anti-parallel
Strand 4
A
160 168anti-parallel
Strand 5
A
171 175anti-parallel
Strand 6
A
183 187anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
107 108anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
215 221anti-parallel
Strand 3
B
46 54anti-parallel
Strand 4
B
160 168anti-parallel
Strand 5
B
171 175anti-parallel
Strand 6
B
183 187anti-parallel
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