Analysis of interatomic Contacts of Structural Units in PDB entry:
4JKL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JKL entry

There are 2 chains in PDB entry 4JKL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1ASN 596
B
 ASN -1ASN 596
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4JKL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 48Right-handed 310
Helix 2
2
A
50 55Right-handed alpha
Helix 3
3
A
112 116Right-handed 310
Helix 4
4
A
306 321Right-handed alpha
Helix 5
5
A
333 344Right-handed alpha
Helix 6
6
A
372 376Right-handed 310
Helix 7
7
A
379 395Right-handed alpha
Helix 8
8
A
415 431Right-handed alpha
Helix 9
9
A
473 492Right-handed alpha
Helix 10
10
A
519 535Right-handed alpha
Helix 11
11
A
576 586Right-handed alpha
Helix 12
12
B
44 48Right-handed 310
Helix 13
13
B
50 55Right-handed alpha
Helix 14
14
B
112 116Right-handed 310
Helix 15
15
B
306 320Right-handed alpha
Helix 16
16
B
333 344Right-handed alpha
Helix 17
17
B
372 377Right-handed alpha
Helix 18
18
B
379 395Right-handed alpha
Helix 19
19
B
415 431Right-handed alpha
Helix 20
20
B
473 492Right-handed alpha
Helix 21
21
B
519 535Right-handed alpha
Helix 22
22
B
576 586Right-handed alpha
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There are 14 sheets in PDB entry 4JKL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
171 177anti-parallel
Strand 3
A
75 81anti-parallel
Strand 4
A
107 110anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
59 67anti-parallel
Strand 4
A
120 128anti-parallel
Strand 5
A
87 92anti-parallel
Strand 6
A
95 101anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 145first strand
Strand 2
A
151 157anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 190first strand
Strand 2
A
197 205anti-parallel
Strand 3
A
231 234anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 227first strand
Strand 2
A
211 217anti-parallel
Strand 3
A
248 256anti-parallel
Strand 4
A
259 268anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
279 282anti-parallel
Strand 3
A
285 286anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 293first strand
Strand 2
A
324 326parallel
Strand 3
A
346 350parallel
Strand 4
A
400 407parallel
Strand 5
A
437 441parallel
Strand 6
A
458 462parallel
Strand 7
A
497 501parallel
Strand 8
A
540 545parallel
Strand 9
A
289 293parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
171 177anti-parallel
Strand 3
B
75 81anti-parallel
Strand 4
B
107 110anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
59 67anti-parallel
Strand 4
B
120 128anti-parallel
Strand 5
B
87 92anti-parallel
Strand 6
B
95 101anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 145first strand
Strand 2
B
151 157anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 190first strand
Strand 2
B
197 205anti-parallel
Strand 3
B
231 234anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 227first strand
Strand 2
B
211 217anti-parallel
Strand 3
B
248 256anti-parallel
Strand 4
B
259 268anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 276first strand
Strand 2
B
279 282anti-parallel
Strand 3
B
285 286anti-parallel
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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 293first strand
Strand 2
B
324 326parallel
Strand 3
B
346 350parallel
Strand 4
B
400 407parallel
Strand 5
B
437 441parallel
Strand 6
B
458 462parallel
Strand 7
B
497 501parallel
Strand 8
B
540 545parallel
Strand 9
B
289 293parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il