Analysis of interatomic Contacts of Structural Units in PDB entry:
4JKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JKV entry

There are 2 chains in PDB entry 4JKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1CYS 550
B
 THR 0LEU 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4JKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 19Right-handed alpha
Helix 2
2
A
22 43Right-handed alpha
Helix 3
3
A
45 49Right-handed 310
Helix 4
4
A
55 81Right-handed alpha
Helix 5
5
A
83 102Right-handed alpha
Helix 6
6
A
202 204Right-handed 310
Helix 7
7
A
223 255Right-handed alpha
Helix 8
8
A
255 260Right-handed alpha
Helix 9
9
A
265 283Right-handed alpha
Helix 10
10
A
284 286Right-handed 310
Helix 11
11
A
288 295Right-handed alpha
Helix 12
12
A
312 348Right-handed alpha
Helix 13
13
A
360 379Right-handed alpha
Helix 14
14
A
396 404Right-handed alpha
Helix 15
15
A
404 433Right-handed alpha
Helix 16
16
A
442 493Right-handed alpha
Helix 17
17
A
514 533Right-handed alpha
Helix 18
18
A
534 537Right-handed 310
Helix 19
19
A
538 549Right-handed alpha
Helix 20
20
B
2 19Right-handed alpha
Helix 21
21
B
22 43Right-handed alpha
Helix 22
22
B
45 49Right-handed 310
Helix 23
23
B
55 80Right-handed alpha
Helix 24
24
B
83 102Right-handed alpha
Helix 25
25
B
103 106Right-handed 310
Helix 26
26
B
202 206Right-handed 310
Helix 27
27
B
223 255Right-handed alpha
Helix 28
28
B
255 260Right-handed alpha
Helix 29
29
B
263 283Right-handed alpha
Helix 30
30
B
284 286Right-handed 310
Helix 31
31
B
288 295Right-handed alpha
Helix 32
32
B
312 346Right-handed alpha
Helix 33
33
B
359 379Right-handed alpha
Helix 34
34
B
396 404Right-handed alpha
Helix 35
35
B
404 433Right-handed alpha
Helix 36
36
B
439 441Right-handed 310
Helix 37
37
B
442 491Right-handed alpha
Helix 38
38
B
514 534Right-handed alpha
Helix 39
39
B
535 537Right-handed 310
Helix 40
40
B
538 550Right-handed alpha
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There are 4 sheets in PDB entry 4JKV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
210 215anti-parallel
Strand 3
A
206 207anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 384first strand
Strand 2
A
389 392anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 199first strand
Strand 2
B
213 215anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 384first strand
Strand 2
B
389 392anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il