Analysis of interatomic Contacts of Structural Units in PDB entry:
4JLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JLC entry

There is 1 chain in PDB entry 4JLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 0GLU 656
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4JLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 61Right-handed alpha
Helix 2
2
A
93 99Right-handed alpha
Helix 3
3
A
100 104Right-handed 310
Helix 4
4
A
108 128Right-handed alpha
Helix 5
5
A
137 139Right-handed 310
Helix 6
6
A
175 180Right-handed 310
Helix 7
7
A
181 193Right-handed alpha
Helix 8
8
A
202 217Right-handed alpha
Helix 9
9
A
230 240Right-handed alpha
Helix 10
10
A
270 285Right-handed alpha
Helix 11
11
A
288 293Right-handed 310
Helix 12
12
A
294 308Right-handed alpha
Helix 13
13
A
331 344Right-handed alpha
Helix 14
14
A
346 350Right-handed 310
Helix 15
15
A
366 370Right-handed 310
Helix 16
16
A
407 484Right-handed alpha
Helix 17
17
A
495 525Right-handed alpha
Helix 18
18
A
535 540Right-handed alpha
Helix 19
19
A
543 546Right-handed 310
Helix 20
20
A
547 572Right-handed alpha
Helix 21
21
A
576 645Right-handed alpha
Helix 22
22
A
646 648Right-handed 310
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There are 4 sheets in PDB entry 4JLC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 3first strand
Strand 2
A
7 14anti-parallel
Strand 3
A
22 28anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
82 87anti-parallel
Strand 6
A
70 75anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
151 155anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
247 249parallel
Strand 3
A
258 260anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 326first strand
Strand 2
A
309 315anti-parallel
Strand 3
A
379 382parallel
Strand 4
A
351 354anti-parallel
Strand 5
A
357 359anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il