Analysis of interatomic Contacts of Structural Units in PDB entry:
4JLG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JLG entry

There are 2 chains in PDB entry 4JLG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 117THR 363
B
 VAL 118THR 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4JLG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
209 214Right-handed alpha
Helix 2
2
A
252 258Right-handed alpha
Helix 3
3
A
259 263Right-handed 310
Helix 4
4
A
291 295Right-handed 310
Helix 5
5
A
350 362Right-handed alpha
Helix 6
6
B
209 214Right-handed alpha
Helix 7
7
B
252 258Right-handed alpha
Helix 8
8
B
259 263Right-handed 310
Helix 9
9
B
291 295Right-handed 310
Helix 10
10
B
350 362Right-handed alpha
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There are 12 sheets in PDB entry 4JLG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
128 131anti-parallel
Strand 3
A
141 147anti-parallel
Strand 4
A
153 160anti-parallel
Strand 5
A
163 176anti-parallel
Strand 6
A
179 184anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
128 131anti-parallel
Strand 3
A
141 147anti-parallel
Strand 4
A
153 160anti-parallel
Strand 5
A
163 176anti-parallel
Strand 6
A
190 191anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 220first strand
Strand 2
A
228 232anti-parallel
Strand 3
A
330 333anti-parallel
Strand 4
A
296 297parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 245first strand
Strand 2
A
314 321anti-parallel
Strand 3
A
303 310anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 251first strand
Strand 2
A
273 276anti-parallel
Strand 3
A
267 268anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 343first strand
Strand 2
A
346 347anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 122first strand
Strand 2
B
128 131anti-parallel
Strand 3
B
141 147anti-parallel
Strand 4
B
153 160anti-parallel
Strand 5
B
163 176anti-parallel
Strand 6
B
179 184anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 122first strand
Strand 2
B
128 131anti-parallel
Strand 3
B
141 147anti-parallel
Strand 4
B
153 160anti-parallel
Strand 5
B
163 176anti-parallel
Strand 6
B
190 191anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 220first strand
Strand 2
B
228 232anti-parallel
Strand 3
B
330 333anti-parallel
Strand 4
B
296 297parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 245first strand
Strand 2
B
314 321anti-parallel
Strand 3
B
303 310anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 251first strand
Strand 2
B
273 276anti-parallel
Strand 3
B
267 268anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 343first strand
Strand 2
B
346 347anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il