Analysis of interatomic Contacts of Structural Units in PDB entry:
4JLZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JLZ entry

There are 2 chains in PDB entry 4JLZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 135TRP 497
B
 GLY 135TRP 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4JLZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
138 148Right-handed alpha
Helix 2
2
A
149 173Right-handed alpha
Helix 3
3
A
176 181Right-handed 310
Helix 4
4
A
237 239Right-handed 310
Helix 5
5
A
247 266Right-handed alpha
Helix 6
6
A
267 269Right-handed 310
Helix 7
7
A
308 312Right-handed 310
Helix 8
8
A
322 331Right-handed alpha
Helix 9
9
A
346 350Right-handed 310
Helix 10
10
A
356 366Right-handed alpha
Helix 11
11
A
382 402Right-handed alpha
Helix 12
12
A
411 426Right-handed alpha
Helix 13
13
A
428 435Right-handed 310
Helix 14
14
A
436 455Right-handed alpha
Helix 15
15
A
474 491Right-handed alpha
Helix 16
16
A
492 497Right-handed 310
Helix 17
17
B
138 174Right-handed alpha
Helix 18
18
B
237 241Right-handed 310
Helix 19
19
B
247 267Right-handed alpha
Helix 20
20
B
308 312Right-handed 310
Helix 21
21
B
322 331Right-handed alpha
Helix 22
22
B
356 366Right-handed alpha
Helix 23
23
B
382 402Right-handed alpha
Helix 24
24
B
404 409Right-handed alpha
Helix 25
25
B
411 426Right-handed alpha
Helix 26
26
B
428 435Right-handed 310
Helix 27
27
B
436 455Right-handed alpha
Helix 28
28
B
474 491Right-handed alpha
Helix 29
29
B
492 497Right-handed 310
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There are 7 sheets in PDB entry 4JLZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
200 208anti-parallel
Strand 3
A
293 303parallel
Strand 4
A
283 287anti-parallel
Strand 5
A
271 273anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
200 208anti-parallel
Strand 3
A
293 303parallel
Strand 4
A
334 338anti-parallel
Strand 5
A
352 355anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 216first strand
Strand 2
A
224 228anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
245 246anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
200 208anti-parallel
Strand 3
B
292 303parallel
Strand 4
B
334 338anti-parallel
Strand 5
B
352 355anti-parallel
Strand 6
B
223 227anti-parallel
Strand 7
B
213 216anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
200 208anti-parallel
Strand 3
B
292 303parallel
Strand 4
B
282 288anti-parallel
Strand 5
B
271 273anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 342first strand
Strand 2
B
347 348anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il