Analysis of interatomic Contacts of Structural Units in PDB entry:
4JM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JM0 entry

There are 2 chains in PDB entry 4JM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 39PRO 244
B
 PRO 32LEU 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4JM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
107 109Right-handed 310
Helix 2
2
A
134 137Right-handed 310
Helix 3
3
A
191 193Right-handed 310
Helix 4
4
A
236 241Right-handed alpha
Helix 5
5
B
107 109Right-handed 310
Helix 6
6
B
134 137Right-handed 310
Helix 7
7
B
191 195Right-handed 310
Helix 8
8
B
236 241Right-handed alpha
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There are 7 sheets in PDB entry 4JM0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
151 160parallel
Strand 3
A
55 56parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
151 160parallel
Strand 3
A
139 146anti-parallel
Strand 4
A
76 83anti-parallel
Strand 5
A
91 96anti-parallel
Strand 6
A
102 105anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 70first strand
Strand 2
A
124 132anti-parallel
Strand 3
A
115 120anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
211 213anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
150 160parallel
Strand 3
B
55 56parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
150 160parallel
Strand 3
B
139 146anti-parallel
Strand 4
B
76 83anti-parallel
Strand 5
B
91 96anti-parallel
Strand 6
B
102 105anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 70first strand
Strand 2
B
124 132anti-parallel
Strand 3
B
115 120anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il