Analysis of interatomic Contacts of Structural Units in PDB entry:
4JM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JM2 entry

There are 6 chains in PDB entry 4JM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1LYS 214
B
 GLU 1CYS 214
C
 ASP 1GLY 212
D
 GLU 1LYS 214
E
 VAL 89ILE 491
F
 LYS 1VAL 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4JM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 65Right-handed 310
Helix 2
2
A
83 87Right-handed 310
Helix 3
3
A
156 158Right-handed 310
Helix 4
4
A
185 189Right-handed 310
Helix 5
5
A
201 204Right-handed 310
Helix 6
6
B
79 83Right-handed 310
Helix 7
7
B
121 126Right-handed alpha
Helix 8
8
B
183 187Right-handed alpha
Helix 9
9
C
79 83Right-handed 310
Helix 10
10
C
121 128Right-handed alpha
Helix 11
11
C
183 187Right-handed alpha
Helix 12
12
D
28 30Right-handed 310
Helix 13
13
D
83 87Right-handed 310
Helix 14
14
D
99 100Right-handed 310
Helix 15
15
D
156 158Right-handed 310
Helix 16
16
D
185 189Right-handed 310
Helix 17
17
D
201 204Right-handed 310
Helix 18
18
E
99 116Right-handed alpha
Helix 19
19
E
335 353Right-handed alpha
Helix 20
20
E
368 373Right-handed alpha
Helix 21
21
E
387 391Right-handed 310
Helix 22
22
E
474 484Right-handed alpha
Helix 23
23
F
51 53Right-handed 310
Helix 24
24
F
58 65Right-handed 310
Helix 25
25
F
75 79Right-handed 310
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There are 31 sheets in PDB entry 4JM2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
77 82anti-parallel
Strand 4
A
67 72anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
108 111parallel
Strand 3
A
88 95anti-parallel
Strand 4
A
35 39anti-parallel
Strand 5
A
46 52anti-parallel
Strand 6
A
57 59anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
108 111parallel
Strand 3
A
88 95anti-parallel
Strand 4
A
100 103anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
138 145anti-parallel
Strand 3
A
176 182anti-parallel
Strand 4
A
163 165anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
138 145anti-parallel
Strand 3
A
176 182anti-parallel
Strand 4
A
169 170anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
195 200anti-parallel
Strand 3
A
205 210anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
62 67anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
102 106parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
33 38anti-parallel
Strand 5
B
45 49anti-parallel
Strand 6
B
53 54anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
102 106parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
97 98anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
129 139anti-parallel
Strand 3
B
173 182anti-parallel
Strand 4
B
160 163anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
145 150anti-parallel
Strand 3
B
191 197anti-parallel
Strand 4
B
205 210anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
70 75anti-parallel
Strand 4
C
62 67anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
102 106parallel
Strand 3
C
85 90anti-parallel
Strand 4
C
33 38anti-parallel
Strand 5
C
45 49anti-parallel
Strand 6
C
53 54anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
102 106parallel
Strand 3
C
85 90anti-parallel
Strand 4
C
97 98anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 118first strand
Strand 2
C
129 137anti-parallel
Strand 3
C
176 182anti-parallel
Strand 4
C
159 162anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 154first strand
Strand 2
C
145 150anti-parallel
Strand 3
C
191 197anti-parallel
Strand 4
C
208 210anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
17 25anti-parallel
Strand 3
D
77 82anti-parallel
Strand 4
D
67 72anti-parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
107 111parallel
Strand 3
D
88 96anti-parallel
Strand 4
D
32 39anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
57 59anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
107 111parallel
Strand 3
D
88 96anti-parallel
Strand 4
D
102 103anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 124first strand
Strand 2
D
139 145anti-parallel
Strand 3
D
176 182anti-parallel
Strand 4
D
163 165anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 124first strand
Strand 2
D
139 145anti-parallel
Strand 3
D
176 182anti-parallel
Strand 4
D
169 170anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
151 154first strand
Strand 2
D
195 200anti-parallel
Strand 3
D
205 210anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
91 94first strand
Strand 2
E
236 239anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
197 202first strand
Strand 2
E
120 125anti-parallel
Strand 3
E
432 434anti-parallel
Strand 4
E
423 425anti-parallel
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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
242 245first strand
Strand 2
E
223 228anti-parallel
Strand 3
E
486 490anti-parallel
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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
259 261first strand
Strand 2
E
443 456anti-parallel
Strand 3
E
284 298anti-parallel
Strand 4
E
328 334anti-parallel
Strand 5
E
413 420anti-parallel
Strand 6
E
381 385anti-parallel
Strand 7
E
374 378anti-parallel
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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
271 273first strand
Strand 2
E
284 298anti-parallel
Strand 3
E
443 456anti-parallel
Strand 4
E
465 470anti-parallel
Strand 5
E
358 361parallel
Strand 6
E
393 395anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 7first strand
Strand 2
F
89 102parallel
Strand 3
F
80 86anti-parallel
Strand 4
F
27 30anti-parallel
Strand 5
F
35 40anti-parallel
Strand 6
F
43 46anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 7first strand
Strand 2
F
89 102parallel
Strand 3
F
114 119anti-parallel
Strand 4
F
143 146anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 14first strand
Strand 2
F
69 71anti-parallel
Strand 3
F
55 56anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
137 140first strand
Strand 2
F
127 131anti-parallel
Strand 3
F
157 163anti-parallel
Strand 4
F
166 172anti-parallel
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