Analysis of interatomic Contacts of Structural Units in PDB entry:
4JM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JM3 entry

There are 2 chains in PDB entry 4JM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 34VAL 296
B
 HIS 25SER 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4JM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
70 77Right-handed alpha
Helix 2
2
A
105 109Right-handed 310
Helix 3
3
A
110 114Right-handed alpha
Helix 4
4
A
142 152Right-handed alpha
Helix 5
5
A
208 212Right-handed 310
Helix 6
6
A
262 267Right-handed alpha
Helix 7
7
B
70 76Right-handed alpha
Helix 8
8
B
105 109Right-handed 310
Helix 9
9
B
110 114Right-handed alpha
Helix 10
10
B
142 152Right-handed alpha
Helix 11
11
B
208 212Right-handed 310
Helix 12
12
B
262 267Right-handed alpha
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There are 4 sheets in PDB entry 4JM3. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
115 127anti-parallel
Strand 3
A
90 102anti-parallel
Strand 4
A
56 68anti-parallel
Strand 5
A
272 292anti-parallel
Strand 6
A
248 257anti-parallel
Strand 7
A
191 204anti-parallel
Strand 8
A
181 188anti-parallel
Strand 9
A
160 163anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
130 140parallel
Strand 3
A
115 127anti-parallel
Strand 4
A
90 102anti-parallel
Strand 5
A
56 68anti-parallel
Strand 6
A
272 292anti-parallel
Strand 7
A
234 245anti-parallel
Strand 8
A
216 219anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
115 127anti-parallel
Strand 3
B
90 102anti-parallel
Strand 4
B
56 68anti-parallel
Strand 5
B
272 292anti-parallel
Strand 6
B
248 257anti-parallel
Strand 7
B
191 204anti-parallel
Strand 8
B
181 188anti-parallel
Strand 9
B
160 163anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
130 140parallel
Strand 3
B
115 127anti-parallel
Strand 4
B
90 102anti-parallel
Strand 5
B
56 68anti-parallel
Strand 6
B
272 292anti-parallel
Strand 7
B
234 245anti-parallel
Strand 8
B
216 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il