Analysis of interatomic Contacts of Structural Units in PDB entry:
4JMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JMK entry

There are 2 chains in PDB entry 4JMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 160PRO 310
B
 MET 159LEU 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4JMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
172 177Right-handed alpha
Helix 2
2
A
178 185Right-handed alpha
Helix 3
3
A
204 206Right-handed 310
Helix 4
4
A
221 223Right-handed 310
Helix 5
5
A
224 238Right-handed alpha
Helix 6
6
A
251 266Right-handed alpha
Helix 7
7
A
268 280Right-handed alpha
Helix 8
8
A
286 307Right-handed alpha
Helix 9
9
B
172 177Right-handed alpha
Helix 10
10
B
178 185Right-handed alpha
Helix 11
11
B
204 206Right-handed 310
Helix 12
12
B
221 223Right-handed 310
Helix 13
13
B
224 238Right-handed alpha
Helix 14
14
B
251 266Right-handed alpha
Helix 15
15
B
268 280Right-handed alpha
Helix 16
16
B
286 301Right-handed alpha
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There are 2 sheets in PDB entry 4JMK. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
168 171anti-parallel
Strand 3
A
241 245parallel
Strand 4
A
187 192parallel
Strand 5
A
208 210parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
168 171anti-parallel
Strand 3
B
241 245parallel
Strand 4
B
187 192parallel
Strand 5
B
208 210parallel
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