Analysis of interatomic Contacts of Structural Units in PDB entry:
4JMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JMQ entry

There are 4 chains in PDB entry 4JMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 205
B
 MET 1GLU 205
C
 MET 1HIS 217
D
 MET 1GLU 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4JMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
58 76Right-handed alpha
Helix 3
3
A
84 87Right-handed 310
Helix 4
4
A
95 98Right-handed 310
Helix 5
5
A
179 183Right-handed 310
Helix 6
6
B
12 16Right-handed 310
Helix 7
7
B
58 76Right-handed alpha
Helix 8
8
B
84 87Right-handed 310
Helix 9
9
B
179 183Right-handed 310
Helix 10
10
C
12 16Right-handed 310
Helix 11
11
C
58 76Right-handed alpha
Helix 12
12
C
84 87Right-handed 310
Helix 13
13
D
12 16Right-handed 310
Helix 14
14
D
58 76Right-handed alpha
Helix 15
15
D
84 87Right-handed 310
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There are 11 sheets in PDB entry 4JMQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 25first strand
Strand 2
A
47 53anti-parallel
Strand 3
A
197 202anti-parallel
Strand 4
A
172 177anti-parallel
Strand 5
A
79 82anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
117 119anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 112first strand
Strand 2
A
147 153anti-parallel
Strand 3
A
135 144anti-parallel
Strand 4
A
126 129anti-parallel
Strand 5
A
166 167anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 25first strand
Strand 2
B
47 53anti-parallel
Strand 3
B
197 202anti-parallel
Strand 4
B
172 177anti-parallel
Strand 5
B
79 82anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
117 118anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 112first strand
Strand 2
B
147 153anti-parallel
Strand 3
B
135 144anti-parallel
Strand 4
B
126 129anti-parallel
Strand 5
B
166 167anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 25first strand
Strand 2
C
47 53anti-parallel
Strand 3
C
197 202anti-parallel
Strand 4
C
172 177anti-parallel
Strand 5
C
79 82anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 92first strand
Strand 2
C
118 119anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 112first strand
Strand 2
C
147 153anti-parallel
Strand 3
C
135 144anti-parallel
Strand 4
C
126 129anti-parallel
Strand 5
C
166 167anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 25first strand
Strand 2
D
47 53anti-parallel
Strand 3
D
197 202anti-parallel
Strand 4
D
172 177anti-parallel
Strand 5
D
79 82anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
108 112first strand
Strand 2
D
147 153anti-parallel
Strand 3
D
135 144anti-parallel
Strand 4
D
126 129anti-parallel
Strand 5
D
166 167anti-parallel
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