Analysis of interatomic Contacts of Structural Units in PDB entry:
4JMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JMR entry

There are 8 chains in PDB entry 4JMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9SER 179
B
 VAL 7SER 179
C
 GLU 9GLN 174
D
 VAL 7ARG 173
F
 MET 1ASN 17
E
 ALA 2LYS 15
G
 PRO 3TRP 13
H
 MET 5ASN 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4JMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 24Right-handed alpha
Helix 2
2
A
89 94Right-handed alpha
Helix 3
3
A
104 113Right-handed 310
Helix 4
4
A
121 127Right-handed alpha
Helix 5
5
A
131 136Right-handed alpha
Helix 6
6
A
139 179Right-handed alpha
Helix 7
7
B
13 24Right-handed alpha
Helix 8
8
B
89 94Right-handed alpha
Helix 9
9
B
104 113Right-handed 310
Helix 10
10
B
121 127Right-handed alpha
Helix 11
11
B
131 138Right-handed alpha
Helix 12
12
B
139 177Right-handed alpha
Helix 13
13
C
13 24Right-handed alpha
Helix 14
14
C
89 94Right-handed alpha
Helix 15
15
C
104 113Right-handed 310
Helix 16
16
C
121 127Right-handed alpha
Helix 17
17
C
131 136Right-handed alpha
Helix 18
18
C
139 172Right-handed alpha
Helix 19
19
D
13 24Right-handed alpha
Helix 20
20
D
89 94Right-handed alpha
Helix 21
21
D
104 113Right-handed 310
Helix 22
22
D
121 126Right-handed alpha
Helix 23
23
D
131 136Right-handed alpha
Helix 24
24
D
139 173Right-handed alpha
Helix 25
25
F
6 15Right-handed alpha
Helix 26
26
E
6 15Right-handed alpha
Helix 27
27
G
6 12Right-handed alpha
Helix 28
28
H
6 16Right-handed alpha
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There are 4 sheets in PDB entry 4JMR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
65 73anti-parallel
Strand 3
A
50 59anti-parallel
Strand 4
A
35 40anti-parallel
Strand 5
A
84 88parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
65 73anti-parallel
Strand 3
B
50 59anti-parallel
Strand 4
B
35 40anti-parallel
Strand 5
B
85 88parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 11first strand
Strand 2
C
65 73anti-parallel
Strand 3
C
50 59anti-parallel
Strand 4
C
35 40anti-parallel
Strand 5
C
84 88parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 11first strand
Strand 2
D
65 73anti-parallel
Strand 3
D
50 59anti-parallel
Strand 4
D
35 40anti-parallel
Strand 5
D
84 88parallel
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