Analysis of interatomic Contacts of Structural Units in PDB entry:
4JN6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JN6 entry

There are 4 chains in PDB entry 4JN6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4GLY 341
B
 SER 3VAL 298
C
 MET 4ALA 342
D
 SER 3VAL 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 61 helices in PDB entry 4JN6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 21Right-handed alpha
Helix 2
2
A
26 40Right-handed alpha
Helix 3
3
A
66 78Right-handed alpha
Helix 4
4
A
93 103Right-handed alpha
Helix 5
5
A
116 119Right-handed 310
Helix 6
6
A
120 130Right-handed alpha
Helix 7
7
A
140 144Right-handed 310
Helix 8
8
A
145 159Right-handed alpha
Helix 9
9
A
175 190Right-handed alpha
Helix 10
10
A
205 216Right-handed alpha
Helix 11
11
A
224 228Right-handed 310
Helix 12
12
A
236 247Right-handed alpha
Helix 13
13
A
254 265Right-handed alpha
Helix 14
14
A
266 270Right-handed 310
Helix 15
15
A
277 287Right-handed alpha
Helix 16
16
A
291 304Right-handed alpha
Helix 17
17
A
306 317Right-handed alpha
Helix 18
18
A
324 339Right-handed alpha
Helix 19
19
B
13 25Right-handed alpha
Helix 20
20
B
41 50Right-handed alpha
Helix 21
21
B
58 63Right-handed alpha
Helix 22
22
B
77 92Right-handed alpha
Helix 23
23
B
108 117Right-handed alpha
Helix 24
24
B
126 141Right-handed alpha
Helix 25
25
B
157 159Right-handed 310
Helix 26
26
B
160 166Right-handed alpha
Helix 27
27
B
166 181Right-handed alpha
Helix 28
28
B
215 232Right-handed alpha
Helix 29
29
B
275 296Right-handed alpha
Helix 30
30
C
15 21Right-handed alpha
Helix 31
31
C
26 41Right-handed alpha
Helix 32
32
C
66 78Right-handed alpha
Helix 33
33
C
93 103Right-handed alpha
Helix 34
34
C
116 119Right-handed 310
Helix 35
35
C
120 130Right-handed alpha
Helix 36
36
C
140 144Right-handed 310
Helix 37
37
C
145 160Right-handed alpha
Helix 38
38
C
175 190Right-handed alpha
Helix 39
39
C
191 193Right-handed 310
Helix 40
40
C
205 216Right-handed alpha
Helix 41
41
C
224 228Right-handed 310
Helix 42
42
C
236 248Right-handed alpha
Helix 43
43
C
254 265Right-handed alpha
Helix 44
44
C
266 270Right-handed 310
Helix 45
45
C
277 287Right-handed alpha
Helix 46
46
C
289 291Right-handed 310
Helix 47
47
C
292 304Right-handed alpha
Helix 48
48
C
306 317Right-handed alpha
Helix 49
49
C
325 341Right-handed alpha
Helix 50
50
D
13 25Right-handed alpha
Helix 51
51
D
41 50Right-handed alpha
Helix 52
52
D
58 63Right-handed alpha
Helix 53
53
D
77 91Right-handed alpha
Helix 54
54
D
108 113Right-handed alpha
Helix 55
55
D
114 117Right-handed 310
Helix 56
56
D
126 141Right-handed alpha
Helix 57
57
D
157 159Right-handed 310
Helix 58
58
D
160 166Right-handed alpha
Helix 59
59
D
166 181Right-handed alpha
Helix 60
60
D
215 232Right-handed alpha
Helix 61
61
D
275 297Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4JN6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 14first strand
Strand 2
A
44 47parallel
Strand 3
A
82 87parallel
Strand 4
A
107 113parallel
Strand 5
A
133 139parallel
Strand 6
A
163 168parallel
Strand 7
A
194 199parallel
Strand 8
A
220 223parallel
Strand 9
A
8 14parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
29 35parallel
Strand 3
B
5 10parallel
Strand 4
B
71 74parallel
Strand 5
B
94 97parallel
Strand 6
B
121 123parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 194first strand
Strand 2
B
148 155parallel
Strand 3
B
202 210anti-parallel
Strand 4
B
256 264anti-parallel
Strand 5
B
237 239anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 194first strand
Strand 2
B
148 155parallel
Strand 3
B
202 210anti-parallel
Strand 4
B
256 264anti-parallel
Strand 5
B
244 246anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 14first strand
Strand 2
C
44 47parallel
Strand 3
C
82 87parallel
Strand 4
C
107 113parallel
Strand 5
C
133 139parallel
Strand 6
C
163 168parallel
Strand 7
C
194 199parallel
Strand 8
C
220 223parallel
Strand 9
C
8 14parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 55first strand
Strand 2
D
29 35parallel
Strand 3
D
5 10parallel
Strand 4
D
71 74parallel
Strand 5
D
94 97parallel
Strand 6
D
121 123parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
187 194first strand
Strand 2
D
148 155parallel
Strand 3
D
202 210anti-parallel
Strand 4
D
256 264anti-parallel
Strand 5
D
237 239anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
187 194first strand
Strand 2
D
148 155parallel
Strand 3
D
202 210anti-parallel
Strand 4
D
256 264anti-parallel
Strand 5
D
244 246anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il