Analysis of interatomic Contacts of Structural Units in PDB entry:
4JN7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JN7 entry

There is 1 chain in PDB entry 4JN7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4JN7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 42Right-handed 310
Helix 2
2
A
43 53Right-handed alpha
Helix 3
3
A
62 75Right-handed alpha
Helix 4
4
A
78 101Right-handed alpha
Helix 5
5
A
104 109Right-handed 310
Helix 6
6
A
128 144Right-handed alpha
Helix 7
7
A
161 180Right-handed alpha
Helix 8
8
A
196 208Right-handed alpha
Helix 9
9
A
209 211Right-handed 310
Helix 10
10
A
224 232Right-handed alpha
Helix 11
11
A
246 256Right-handed alpha
Helix 12
12
A
271 285Right-handed alpha
Helix 13
13
A
296 310Right-handed alpha
Helix 14
14
A
368 375Right-handed alpha
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There are 4 sheets in PDB entry 4JN7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 13first strand
Strand 2
A
16 25anti-parallel
Strand 3
A
30 34anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
261 262parallel
Strand 3
A
238 240parallel
Strand 4
A
215 216parallel
Strand 5
A
185 189parallel
Strand 6
A
147 150parallel
Strand 7
A
116 122parallel
Strand 8
A
316 318parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
261 262parallel
Strand 3
A
238 240parallel
Strand 4
A
215 216parallel
Strand 5
A
185 189parallel
Strand 6
A
147 150parallel
Strand 7
A
116 122parallel
Strand 8
A
353 355anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 324first strand
Strand 2
A
337 339anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il