Analysis of interatomic Contacts of Structural Units in PDB entry:
4JND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JND entry

There is 1 chain in PDB entry 4JND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 13HIS 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4JND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 21Right-handed 310
Helix 2
2
A
22 31Right-handed alpha
Helix 3
3
A
31 40Right-handed alpha
Helix 4
4
A
64 66Right-handed 310
Helix 5
5
A
67 83Right-handed alpha
Helix 6
6
A
86 106Right-handed alpha
Helix 7
7
A
109 113Right-handed 310
Helix 8
8
A
124 135Right-handed alpha
Helix 9
9
A
135 145Right-handed alpha
Helix 10
10
A
151 156Right-handed 310
Helix 11
11
A
207 228Right-handed alpha
Helix 12
12
A
233 257Right-handed alpha
Helix 13
13
A
305 315Right-handed alpha
Helix 14
14
A
341 344Right-handed 310
Helix 15
15
A
369 374Right-handed alpha
Helix 16
16
A
377 392Right-handed alpha
Helix 17
17
A
393 398Right-handed 310
Helix 18
18
A
399 411Right-handed alpha
Helix 19
19
A
426 435Right-handed alpha
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There are 4 sheets in PDB entry 4JND. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 168first strand
Strand 2
A
417 423anti-parallel
Strand 3
A
362 368anti-parallel
Strand 4
A
286 290anti-parallel
Strand 5
A
294 296anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 182first strand
Strand 2
A
196 204anti-parallel
Strand 3
A
261 262anti-parallel
Strand 4
A
338 339anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 182first strand
Strand 2
A
196 204anti-parallel
Strand 3
A
264 270anti-parallel
Strand 4
A
275 281anti-parallel
Strand 5
A
352 357anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
325 328anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il