Analysis of interatomic Contacts of Structural Units in PDB entry:
4JNE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JNE entry

There are 2 chains in PDB entry 4JNE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1GLN 604
B
 SER 1GLN 604
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4JNE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 57Right-handed alpha
Helix 2
2
A
58 63Right-handed 310
Helix 3
3
A
69 72Right-handed 310
Helix 4
4
A
79 89Right-handed alpha
Helix 5
5
A
111 132Right-handed alpha
Helix 6
6
A
147 161Right-handed alpha
Helix 7
7
A
171 182Right-handed alpha
Helix 8
8
A
228 249Right-handed alpha
Helix 9
9
A
251 254Right-handed 310
Helix 10
10
A
255 273Right-handed alpha
Helix 11
11
A
302 328Right-handed alpha
Helix 12
12
A
330 334Right-handed 310
Helix 13
13
A
341 345Right-handed 310
Helix 14
14
A
346 358Right-handed alpha
Helix 15
15
A
369 383Right-handed alpha
Helix 16
16
A
447 451Right-handed 310
Helix 17
17
A
508 554Right-handed alpha
Helix 18
18
A
555 557Right-handed 310
Helix 19
19
A
558 578Right-handed alpha
Helix 20
20
A
580 603Right-handed alpha
Helix 21
21
B
51 58Right-handed alpha
Helix 22
22
B
59 61Right-handed 310
Helix 23
23
B
69 72Right-handed 310
Helix 24
24
B
79 89Right-handed alpha
Helix 25
25
B
111 132Right-handed alpha
Helix 26
26
B
147 161Right-handed alpha
Helix 27
27
B
171 182Right-handed alpha
Helix 28
28
B
228 249Right-handed alpha
Helix 29
29
B
255 273Right-handed alpha
Helix 30
30
B
302 328Right-handed alpha
Helix 31
31
B
330 334Right-handed 310
Helix 32
32
B
341 345Right-handed 310
Helix 33
33
B
346 358Right-handed alpha
Helix 34
34
B
369 383Right-handed alpha
Helix 35
35
B
447 451Right-handed 310
Helix 36
36
B
508 530Right-handed alpha
Helix 37
37
B
530 554Right-handed alpha
Helix 38
38
B
555 557Right-handed 310
Helix 39
39
B
558 578Right-handed alpha
Helix 40
40
B
580 604Right-handed alpha
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There are 16 sheets in PDB entry 4JNE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
36 37anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
4 8anti-parallel
Strand 4
A
137 142parallel
Strand 5
A
164 170parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
39 42anti-parallel
Strand 3
A
65 67anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
101 105anti-parallel
Strand 3
A
108 110anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 340first strand
Strand 2
A
188 195parallel
Strand 3
A
200 210anti-parallel
Strand 4
A
213 224anti-parallel
Strand 5
A
389 394parallel
Strand 6
A
417 418anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 289first strand
Strand 2
A
292 301anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 412first strand
Strand 2
A
399 403anti-parallel
Strand 3
A
436 442anti-parallel
Strand 4
A
452 459anti-parallel
Strand 5
A
500 502anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 427first strand
Strand 2
A
472 478anti-parallel
Strand 3
A
484 490anti-parallel
Strand 4
A
496 497anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
13 20anti-parallel
Strand 3
B
36 37anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
13 20anti-parallel
Strand 3
B
4 9anti-parallel
Strand 4
B
137 142parallel
Strand 5
B
164 170parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
39 42anti-parallel
Strand 3
B
65 67anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 95first strand
Strand 2
B
101 105anti-parallel
Strand 3
B
108 110anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 340first strand
Strand 2
B
188 195parallel
Strand 3
B
200 210anti-parallel
Strand 4
B
213 224anti-parallel
Strand 5
B
389 392parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 288first strand
Strand 2
B
293 301anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
407 412first strand
Strand 2
B
399 403anti-parallel
Strand 3
B
436 442anti-parallel
Strand 4
B
452 459anti-parallel
Strand 5
B
500 502anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 427first strand
Strand 2
B
472 478anti-parallel
Strand 3
B
484 490anti-parallel
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