Analysis of interatomic Contacts of Structural Units in PDB entry:
4JNQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JNQ entry

There is 1 chain in PDB entry 4JNQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLU 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 4JNQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
41 46Right-handed 310
Helix 3
3
A
60 75Right-handed alpha
Helix 4
4
A
122 128Right-handed alpha
Helix 5
5
A
136 141Right-handed alpha
Helix 6
6
A
142 145Right-handed 310
Helix 7
7
A
155 167Right-handed alpha
Helix 8
8
A
184 193Right-handed alpha
Helix 9
9
A
294 317Right-handed alpha
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There are 5 sheets in PDB entry 4JNQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
32 34parallel
Strand 3
A
3 11parallel
Strand 4
A
103 111parallel
Strand 5
A
94 98anti-parallel
Strand 6
A
84 88anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
32 34parallel
Strand 3
A
3 11parallel
Strand 4
A
103 111parallel
Strand 5
A
281 283parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
248 250anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
241 244parallel
Strand 3
A
148 152parallel
Strand 4
A
171 175parallel
Strand 5
A
197 200parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 210first strand
Strand 2
A
221 228anti-parallel
Strand 3
A
234 238anti-parallel
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