Analysis of interatomic Contacts of Structural Units in PDB entry:
4JNT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JNT entry

There are 2 chains in PDB entry 4JNT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 694	GLU 1023
B	LEU 694	GLU 1023

There are 3 helices in PDB entry 4JNT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	766	770	Right-handed 310
Helix 2	2	B	766	770	Right-handed 310
Helix 3	3	B	1004	1008	Right-handed 310

There are 20 sheets in PDB entry 4JNT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	714	718	first strand
Strand 2	A	700	711	anti-parallel
Strand 3	A	723	724	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	714	718	first strand
Strand 2	A	700	711	anti-parallel
Strand 3	A	756	762	anti-parallel
Strand 4	A	771	776	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	730	732	first strand
Strand 2	A	737	740	anti-parallel
Strand 3	A	745	747	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	785	786	first strand
Strand 2	A	842	850	parallel
Strand 3	A	828	835	anti-parallel
Strand 4	A	804	806	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	793	795	first strand
Strand 2	A	817	820	anti-parallel
Strand 3	A	811	814	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	863	866	first strand
Strand 2	A	869	875	anti-parallel
Strand 3	A	882	886	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	902	904	first strand
Strand 2	A	894	899	anti-parallel
Strand 3	A	917	920	anti-parallel
Strand 4	A	927	928	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	939	941	first strand
Strand 2	A	954	960	anti-parallel
Strand 3	A	947	951	anti-parallel
Strand 4	A	971	972	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	966	967	first strand
Strand 2	A	998	999	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	977	first strand
Strand 2	A	987	993	anti-parallel
Strand 3	A	1016	1022	anti-parallel
Strand 4	A	1011	1012	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	724	first strand
Strand 2	B	700	705	anti-parallel
Strand 3	B	756	762	anti-parallel
Strand 4	B	771	776	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	710	711	first strand
Strand 2	B	714	715	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	730	732	first strand
Strand 2	B	736	740	anti-parallel
Strand 3	B	745	749	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	785	786	first strand
Strand 2	B	847	850	parallel
Strand 3	B	828	831	anti-parallel
Strand 4	B	803	806	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	793	795	first strand
Strand 2	B	817	820	anti-parallel
Strand 3	B	811	814	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	834	835	first strand
Strand 2	B	842	843	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	863	866	first strand
Strand 2	B	869	875	anti-parallel
Strand 3	B	882	886	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	902	904	first strand
Strand 2	B	894	899	anti-parallel
Strand 3	B	917	920	anti-parallel
Strand 4	B	927	928	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	936	first strand
Strand 2	B	939	941	anti-parallel
Strand 3	B	954	960	anti-parallel
Strand 4	B	947	951	anti-parallel
Strand 5	B	971	972	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	976	977	first strand
Strand 2	B	987	993	anti-parallel
Strand 3	B	1016	1022	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JNT

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JNT