Analysis of interatomic Contacts of Structural Units in PDB entry:
4JNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JNW entry

There are 2 chains in PDB entry 4JNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 18SER 337
B
 LYS 18ILE 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4JNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 22Right-handed 310
Helix 2
2
A
59 75Right-handed alpha
Helix 3
3
A
104 110Right-handed alpha
Helix 4
4
A
117 138Right-handed alpha
Helix 5
5
A
146 148Right-handed 310
Helix 6
6
A
183 187Right-handed 310
Helix 7
7
A
188 193Right-handed alpha
Helix 8
8
A
198 216Right-handed alpha
Helix 9
9
A
224 234Right-handed alpha
Helix 10
10
A
240 245Right-handed alpha
Helix 11
11
A
248 257Right-handed alpha
Helix 12
12
A
262 266Right-handed 310
Helix 13
13
A
268 275Right-handed alpha
Helix 14
14
A
275 280Right-handed alpha
Helix 15
15
A
281 285Right-handed 310
Helix 16
16
A
292 303Right-handed alpha
Helix 17
17
A
311 319Right-handed 310
Helix 18
18
B
18 22Right-handed 310
Helix 19
19
B
59 75Right-handed alpha
Helix 20
20
B
104 110Right-handed alpha
Helix 21
21
B
117 138Right-handed alpha
Helix 22
22
B
146 148Right-handed 310
Helix 23
23
B
183 187Right-handed 310
Helix 24
24
B
188 193Right-handed alpha
Helix 25
25
B
198 216Right-handed alpha
Helix 26
26
B
224 234Right-handed alpha
Helix 27
27
B
248 257Right-handed alpha
Helix 28
28
B
262 266Right-handed 310
Helix 29
29
B
268 275Right-handed alpha
Helix 30
30
B
275 280Right-handed alpha
Helix 31
31
B
281 285Right-handed 310
Helix 32
32
B
292 303Right-handed alpha
Helix 33
33
B
311 319Right-handed 310
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There are 8 sheets in PDB entry 4JNW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 32first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
92 98anti-parallel
Strand 5
A
83 88anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
169 170anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
160 162anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 181first strand
Strand 2
A
329 334anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 32first strand
Strand 2
B
36 43anti-parallel
Strand 3
B
48 56anti-parallel
Strand 4
B
92 97anti-parallel
Strand 5
B
83 88anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 141first strand
Strand 2
B
169 170anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
160 162anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 181first strand
Strand 2
B
329 335anti-parallel
Strand 3
B
196 197parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il