Analysis of interatomic Contacts of Structural Units in PDB entry:
4JO0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JO0 entry

There is 1 chain in PDB entry 4JO0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2LEU 532
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4JO0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 24Right-handed 310
Helix 2
2
A
25 36Right-handed alpha
Helix 3
3
A
36 47Right-handed alpha
Helix 4
4
A
47 56Right-handed alpha
Helix 5
5
A
57 61Right-handed 310
Helix 6
6
A
68 70Right-handed 310
Helix 7
7
A
71 82Right-handed alpha
Helix 8
8
A
82 102Right-handed alpha
Helix 9
9
A
103 107Right-handed 310
Helix 10
10
A
112 118Right-handed alpha
Helix 11
11
A
143 150Right-handed alpha
Helix 12
12
A
154 156Right-handed 310
Helix 13
13
A
194 203Right-handed alpha
Helix 14
14
A
206 217Right-handed alpha
Helix 15
15
A
220 229Right-handed alpha
Helix 16
16
A
290 294Right-handed 310
Helix 17
17
A
312 320Right-handed alpha
Helix 18
18
A
340 348Right-handed alpha
Helix 19
19
A
410 420Right-handed alpha
Helix 20
20
A
435 441Right-handed alpha
Helix 21
21
A
442 444Right-handed 310
Helix 22
22
A
449 456Right-handed alpha
Helix 23
23
A
462 474Right-handed alpha
Helix 24
24
A
486 492Right-handed 310
Helix 25
25
A
501 517Right-handed alpha
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There are 5 sheets in PDB entry 4JO0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
231 233anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
8 14anti-parallel
Strand 3
A
158 164anti-parallel
Strand 4
A
186 189anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
138 142anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 356first strand
Strand 2
A
323 329parallel
Strand 3
A
298 302parallel
Strand 4
A
268 272parallel
Strand 5
A
260 265anti-parallel
Strand 6
A
252 257anti-parallel
Strand 7
A
528 530anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 364first strand
Strand 2
A
367 373anti-parallel
Strand 3
A
387 393anti-parallel
Strand 4
A
396 400anti-parallel
Strand 5
A
424 428parallel
Strand 6
A
477 481parallel
Strand 7
A
520 523parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il