Analysis of interatomic Contacts of Structural Units in PDB entry:
4JO2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JO2 entry

There are 6 chains in PDB entry 4JO2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLN 2CYS 211
H
 GLN 2PRO 206
P
 THR 303GLY 312
M
 GLN 2CYS 211
I
 GLN 2PRO 206
Q
 THR 303GLY 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4JO2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
27 31Right-handed 310
Helix 2
2
L
79 83Right-handed 310
Helix 3
3
L
182 186Right-handed alpha
Helix 4
4
H
83 87Right-handed 310
Helix 5
5
H
152 154Right-handed 310
Helix 6
6
H
194 197Right-handed 310
Helix 7
7
M
27 31Right-handed 310
Helix 8
8
M
79 83Right-handed 310
Helix 9
9
M
121 127Right-handed alpha
Helix 10
10
M
182 187Right-handed alpha
Helix 11
11
M
209 211Right-handed 310
Helix 12
12
I
83 87Right-handed 310
Helix 13
13
I
152 154Right-handed 310
Helix 14
14
I
194 197Right-handed 310
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There are 22 sheets in PDB entry 4JO2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
102 107parallel
Strand 3
L
84 91anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
102 107parallel
Strand 3
L
84 91anti-parallel
Strand 4
L
96 98anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 139anti-parallel
Strand 3
L
172 181anti-parallel
Strand 4
L
158 162anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
152 153first strand
Strand 2
L
144 149anti-parallel
Strand 3
L
190 197anti-parallel
Strand 4
L
200 207anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
76 81anti-parallel
Strand 4
H
68 71anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
103 107parallel
Strand 3
H
88 94anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 52anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
103 107parallel
Strand 3
H
88 94anti-parallel
Strand 4
H
98 99anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
116 120first strand
Strand 2
H
132 141anti-parallel
Strand 3
H
172 180anti-parallel
Strand 4
H
159 161anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
116 120first strand
Strand 2
H
132 141anti-parallel
Strand 3
H
172 180anti-parallel
Strand 4
H
165 166anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
147 150first strand
Strand 2
H
187 193anti-parallel
Strand 3
H
198 204anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
4 7first strand
Strand 2
M
19 25anti-parallel
Strand 3
M
70 75anti-parallel
Strand 4
M
62 67anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
10 14first strand
Strand 2
M
102 107parallel
Strand 3
M
84 91anti-parallel
Strand 4
M
33 38anti-parallel
Strand 5
M
45 49anti-parallel
Strand 6
M
53 54anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
10 14first strand
Strand 2
M
102 107parallel
Strand 3
M
84 91anti-parallel
Strand 4
M
96 98anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
114 118first strand
Strand 2
M
129 139anti-parallel
Strand 3
M
172 181anti-parallel
Strand 4
M
158 162anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
152 153first strand
Strand 2
M
144 149anti-parallel
Strand 3
M
190 197anti-parallel
Strand 4
M
200 207anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
3 7first strand
Strand 2
I
18 25anti-parallel
Strand 3
I
76 81anti-parallel
Strand 4
I
67 71anti-parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 12first strand
Strand 2
I
103 107parallel
Strand 3
I
88 94anti-parallel
Strand 4
I
34 39anti-parallel
Strand 5
I
45 52anti-parallel
Strand 6
I
57 59anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 12first strand
Strand 2
I
103 107parallel
Strand 3
I
88 94anti-parallel
Strand 4
I
98 99anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
116 120first strand
Strand 2
I
132 141anti-parallel
Strand 3
I
172 180anti-parallel
Strand 4
I
159 161anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
116 120first strand
Strand 2
I
132 141anti-parallel
Strand 3
I
172 180anti-parallel
Strand 4
I
165 166anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
147 150first strand
Strand 2
I
187 193anti-parallel
Strand 3
I
198 204anti-parallel
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