Analysis of interatomic Contacts of Structural Units in PDB entry:
4JO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JO8 entry

There are 2 chains in PDB entry 4JO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 34ILE 291
B
 SER 109VAL 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 4JO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 42Right-handed alpha
Helix 2
2
A
88 91Right-handed 310
Helix 3
3
A
92 113Right-handed alpha
Helix 4
4
A
164 169Right-handed alpha
Helix 5
5
A
173 179Right-handed alpha
Helix 6
6
A
179 194Right-handed alpha
Helix 7
7
A
195 198Right-handed 310
Helix 8
8
A
199 201Right-handed 310
Helix 9
9
B
110 129Right-handed alpha
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There are 3 sheets in PDB entry 4JO8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
69 73anti-parallel
Strand 3
A
58 64anti-parallel
Strand 4
A
43 53anti-parallel
Strand 5
A
119 129anti-parallel
Strand 6
A
133 140anti-parallel
Strand 7
A
144 148anti-parallel
Strand 8
A
155 159anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
218 221anti-parallel
Strand 3
A
250 254anti-parallel
Strand 4
A
241 243anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 231first strand
Strand 2
A
264 268anti-parallel
Strand 3
A
272 275anti-parallel
Strand 4
A
289 290anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il