Analysis of interatomic Contacts of Structural Units in PDB entry:
4JOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JOD entry

There is 1 chain in PDB entry 4JOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 42THR 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4JOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 46Right-handed 310
Helix 2
2
A
77 82Right-handed 310
Helix 3
3
A
84 88Right-handed 310
Helix 4
4
A
104 112Right-handed alpha
Helix 5
5
A
125 144Right-handed alpha
Helix 6
6
A
166 182Right-handed alpha
Helix 7
7
A
195 199Right-handed 310
Helix 8
8
A
208 222Right-handed alpha
Helix 9
9
A
223 225Right-handed 310
Helix 10
10
A
227 240Right-handed alpha
Helix 11
11
A
248 262Right-handed alpha
Helix 12
12
A
267 273Right-handed alpha
Helix 13
13
A
273 289Right-handed alpha
Helix 14
14
A
293 314Right-handed alpha
Helix 15
15
A
334 345Right-handed alpha
Helix 16
16
A
395 404Right-handed alpha
Helix 17
17
A
408 416Right-handed alpha
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There are 3 sheets in PDB entry 4JOD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 163first strand
Strand 2
A
328 333parallel
Strand 3
A
48 58parallel
Strand 4
A
358 366anti-parallel
Strand 5
A
372 378anti-parallel
Strand 6
A
381 382anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 163first strand
Strand 2
A
328 333parallel
Strand 3
A
48 58parallel
Strand 4
A
358 366anti-parallel
Strand 5
A
372 378anti-parallel
Strand 6
A
392 394anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
189 192parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il