Analysis of interatomic Contacts of Structural Units in PDB entry:
4JOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JOM entry

There is 1 chain in PDB entry 4JOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3PRO 640
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 4JOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 17Right-handed 310
Helix 2
2
A
23 34Right-handed alpha
Helix 3
3
A
49 61Right-handed alpha
Helix 4
4
A
74 78Right-handed 310
Helix 5
5
A
90 107Right-handed alpha
Helix 6
6
A
119 122Right-handed 310
Helix 7
7
A
133 136Right-handed 310
Helix 8
8
A
137 146Right-handed alpha
Helix 9
9
A
147 162Right-handed alpha
Helix 10
10
A
177 193Right-handed alpha
Helix 11
11
A
206 208Right-handed 310
Helix 12
12
A
209 222Right-handed alpha
Helix 13
13
A
242 250Right-handed alpha
Helix 14
14
A
253 267Right-handed alpha
Helix 15
15
A
287 308Right-handed alpha
Helix 16
16
A
313 335Right-handed alpha
Helix 17
17
A
337 354Right-handed alpha
Helix 18
18
A
364 367Right-handed 310
Helix 19
19
A
368 374Right-handed alpha
Helix 20
20
A
387 392Right-handed alpha
Helix 21
21
A
410 423Right-handed alpha
Helix 22
22
A
437 449Right-handed alpha
Helix 23
23
A
452 461Right-handed alpha
Helix 24
24
A
470 478Right-handed alpha
Helix 25
25
A
479 488Right-handed alpha
Helix 26
26
A
488 502Right-handed alpha
Helix 27
27
A
521 525Right-handed 310
Helix 28
28
A
543 549Right-handed alpha
Helix 29
29
A
560 579Right-handed alpha
Helix 30
30
A
585 589Right-handed 310
Helix 31
31
A
593 602Right-handed alpha
Helix 32
32
A
613 624Right-handed alpha
Helix 33
33
A
628 638Right-handed alpha
Helix 34
34
A
639 645Right-handed alpha
Helix 35
35
A
646 656Right-handed alpha
Helix 36
36
A
673 678Right-handed alpha
Helix 37
37
A
686 697Right-handed alpha
Helix 38
38
A
702 715Right-handed alpha
Helix 39
39
A
716 735Right-handed alpha
Helix 40
40
A
740 752Right-handed alpha
Helix 41
41
A
757 778Right-handed alpha
Helix 42
42
A
778 789Right-handed alpha
Helix 43
43
A
793 807Right-handed alpha
Helix 44
44
A
834 838Right-handed 310
Helix 45
45
A
842 854Right-handed alpha
Helix 46
46
A
861 867Right-handed alpha
Helix 47
47
A
875 884Right-handed alpha
Helix 48
48
A
894 910Right-handed alpha
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There are 5 sheets in PDB entry 4JOM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 44first strand
Strand 2
A
63 73parallel
Strand 3
A
116 117parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 44first strand
Strand 2
A
63 73parallel
Strand 3
A
82 88anti-parallel
Strand 4
A
128 131anti-parallel
Strand 5
A
166 170parallel
Strand 6
A
196 198parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 407first strand
Strand 2
A
552 557parallel
Strand 3
A
514 517anti-parallel
Strand 4
A
427 431anti-parallel
Strand 5
A
538 542parallel
Strand 6
A
528 529anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 435first strand
Strand 2
A
505 508anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
811 812first strand
Strand 2
A
831 832parallel
Strand 3
A
824 825anti-parallel
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