Analysis of interatomic Contacts of Structural Units in PDB entry:
4JOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JOO entry

There is 1 chain in PDB entry 4JOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 45HIS 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4JOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 51Right-handed 310
Helix 2
2
A
101 105Right-handed 310
Helix 3
3
A
171 175Right-handed 310
Helix 4
4
A
183 192Right-handed alpha
Helix 5
5
A
228 230Right-handed 310
Helix 6
6
A
264 270Right-handed 310
Helix 7
7
A
286 300Right-handed alpha
Helix 8
8
A
306 311Right-handed alpha
Helix 9
9
A
324 328Right-handed 310
Helix 10
10
A
349 353Right-handed alpha
Helix 11
11
A
382 387Right-handed alpha
Helix 12
12
A
437 443Right-handed alpha
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There are 5 sheets in PDB entry 4JOO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 118first strand
Strand 2
A
123 134anti-parallel
Strand 3
A
62 68anti-parallel
Strand 4
A
54 57anti-parallel
Strand 5
A
217 224anti-parallel
Strand 6
A
198 203anti-parallel
Strand 7
A
389 394anti-parallel
Strand 8
A
399 405anti-parallel
Strand 9
A
232 240anti-parallel
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There are 13 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 118first strand
Strand 2
A
123 134anti-parallel
Strand 3
A
143 154anti-parallel
Strand 4
A
86 89parallel
Strand 5
A
165 168anti-parallel
Strand 6
A
73 80parallel
Strand 7
A
62 68anti-parallel
Strand 8
A
54 57anti-parallel
Strand 9
A
217 224anti-parallel
Strand 10
A
198 203anti-parallel
Strand 11
A
389 394anti-parallel
Strand 12
A
399 405anti-parallel
Strand 13
A
232 240anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
251 256anti-parallel
Strand 3
A
331 336anti-parallel
Strand 4
A
342 348anti-parallel
Strand 5
A
417 423anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 275first strand
Strand 2
A
379 381parallel
Strand 3
A
282 285anti-parallel
Strand 4
A
372 375parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
365 370anti-parallel
Strand 3
A
354 356anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il