Analysis of interatomic Contacts of Structural Units in PDB entry:
4JOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JOT entry

There is 1 chain in PDB entry 4JOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -1GLY 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4JOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 35Right-handed 310
Helix 2
2
A
37 49Right-handed alpha
Helix 3
3
A
70 79Right-handed alpha
Helix 4
4
A
80 82Right-handed 310
Helix 5
5
A
84 105Right-handed alpha
Helix 6
6
A
119 126Right-handed alpha
Helix 7
7
A
141 147Right-handed 310
Helix 8
8
A
153 163Right-handed alpha
Helix 9
9
A
163 174Right-handed alpha
Helix 10
10
A
179 185Right-handed alpha
Helix 11
11
A
194 211Right-handed alpha
Helix 12
12
A
213 226Right-handed alpha
Helix 13
13
A
229 245Right-handed alpha
Helix 14
14
A
246 253Right-handed alpha
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There are 2 sheets in PDB entry 4JOT. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
0 2first strand
Strand 2
A
6 12anti-parallel
Strand 3
A
23 29anti-parallel
Strand 4
A
54 60parallel
Strand 5
A
109 113parallel
Strand 6
A
130 134parallel
Strand 7
A
190 192parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
138 140parallel
Strand 3
A
177 178anti-parallel
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