Analysis of interatomic Contacts of Structural Units in PDB entry:
4JP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JP5 entry

There are 6 chains in PDB entry 4JP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	LEU 253
B	SER 4	LEU 253
C	LYS 3	LEU 253
D	SER 4	LEU 253
E	LYS 3	LEU 253
F	SER 4	LEU 253

There are 58 helices in PDB entry 4JP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	17	Right-handed 310
Helix 2	2	A	28	36	Right-handed alpha
Helix 3	3	A	70	83	Right-handed alpha
Helix 4	4	A	118	123	Right-handed 310
Helix 5	5	A	133	148	Right-handed alpha
Helix 6	6	A	163	167	Right-handed 310
Helix 7	7	A	177	181	Right-handed 310
Helix 8	8	A	182	190	Right-handed alpha
Helix 9	9	A	198	208	Right-handed alpha
Helix 10	10	A	239	253	Right-handed alpha
Helix 11	11	B	12	17	Right-handed alpha
Helix 12	12	B	28	36	Right-handed alpha
Helix 13	13	B	70	83	Right-handed alpha
Helix 14	14	B	119	123	Right-handed 310
Helix 15	15	B	133	147	Right-handed alpha
Helix 16	16	B	177	181	Right-handed 310
Helix 17	17	B	182	190	Right-handed alpha
Helix 18	18	B	198	208	Right-handed alpha
Helix 19	19	B	239	252	Right-handed alpha
Helix 20	20	C	12	17	Right-handed 310
Helix 21	21	C	30	36	Right-handed alpha
Helix 22	22	C	70	84	Right-handed alpha
Helix 23	23	C	118	123	Right-handed 310
Helix 24	24	C	133	147	Right-handed alpha
Helix 25	25	C	163	167	Right-handed 310
Helix 26	26	C	177	181	Right-handed 310
Helix 27	27	C	182	190	Right-handed alpha
Helix 28	28	C	198	208	Right-handed alpha
Helix 29	29	C	240	252	Right-handed alpha
Helix 30	30	D	12	17	Right-handed alpha
Helix 31	31	D	27	36	Right-handed alpha
Helix 32	32	D	70	84	Right-handed alpha
Helix 33	33	D	118	123	Right-handed 310
Helix 34	34	D	133	148	Right-handed alpha
Helix 35	35	D	163	167	Right-handed 310
Helix 36	36	D	182	190	Right-handed alpha
Helix 37	37	D	198	208	Right-handed alpha
Helix 38	38	D	239	251	Right-handed alpha
Helix 39	39	E	12	17	Right-handed alpha
Helix 40	40	E	27	29	Right-handed 310
Helix 41	41	E	30	36	Right-handed alpha
Helix 42	42	E	70	84	Right-handed alpha
Helix 43	43	E	118	123	Right-handed 310
Helix 44	44	E	133	148	Right-handed alpha
Helix 45	45	E	163	167	Right-handed 310
Helix 46	46	E	182	190	Right-handed alpha
Helix 47	47	E	198	208	Right-handed alpha
Helix 48	48	E	239	251	Right-handed alpha
Helix 49	49	F	12	16	Right-handed 310
Helix 50	50	F	30	36	Right-handed alpha
Helix 51	51	F	70	84	Right-handed alpha
Helix 52	52	F	118	123	Right-handed 310
Helix 53	53	F	133	148	Right-handed alpha
Helix 54	54	F	163	167	Right-handed 310
Helix 55	55	F	177	181	Right-handed 310
Helix 56	56	F	182	190	Right-handed alpha
Helix 57	57	F	198	208	Right-handed alpha
Helix 58	58	F	241	253	Right-handed alpha

There are 10 sheets in PDB entry 4JP5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	47	first strand
Strand 2	A	50	57	anti-parallel
Strand 3	A	60	65	anti-parallel
Strand 4	A	21	24	parallel
Strand 5	A	88	97	parallel
Strand 6	A	212	222	parallel
Strand 7	A	107	116	anti-parallel
Strand 8	A	151	159	parallel
Strand 9	A	194	196	parallel
Strand 10	A	88	97	anti-parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	47	first strand
Strand 2	B	50	57	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	21	24	parallel
Strand 5	B	88	97	parallel
Strand 6	B	192	196	anti-parallel
Strand 7	B	151	159	parallel
Strand 8	B	107	116	parallel
Strand 9	B	130	131	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	47	first strand
Strand 2	B	50	57	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	21	24	parallel
Strand 5	B	88	97	parallel
Strand 6	B	212	222	parallel
Strand 7	B	107	116	anti-parallel
Strand 8	B	130	131	anti-parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	47	first strand
Strand 2	C	50	57	anti-parallel
Strand 3	C	60	65	anti-parallel
Strand 4	C	21	24	parallel
Strand 5	C	88	95	parallel
Strand 6	C	212	219	parallel
Strand 7	C	107	116	anti-parallel
Strand 8	C	151	159	parallel
Strand 9	C	195	196	parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	47	first strand
Strand 2	D	50	57	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	21	24	parallel
Strand 5	D	88	97	parallel
Strand 6	D	192	196	anti-parallel
Strand 7	D	151	159	parallel
Strand 8	D	107	116	parallel
Strand 9	D	130	131	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	47	first strand
Strand 2	D	50	57	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	21	24	parallel
Strand 5	D	88	97	parallel
Strand 6	D	212	222	parallel
Strand 7	D	107	116	anti-parallel
Strand 8	D	130	131	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	47	first strand
Strand 2	E	50	57	anti-parallel
Strand 3	E	60	65	anti-parallel
Strand 4	E	21	24	parallel
Strand 5	E	88	95	parallel
Strand 6	E	212	219	parallel
Strand 7	E	107	116	anti-parallel
Strand 8	E	130	131	anti-parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	47	first strand
Strand 2	E	50	57	anti-parallel
Strand 3	E	60	65	anti-parallel
Strand 4	E	21	24	parallel
Strand 5	E	88	95	parallel
Strand 6	E	212	219	parallel
Strand 7	E	107	116	anti-parallel
Strand 8	E	151	159	parallel
Strand 9	E	192	196	parallel

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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	47	first strand
Strand 2	F	50	57	anti-parallel
Strand 3	F	60	65	anti-parallel
Strand 4	F	21	23	parallel
Strand 5	F	88	97	parallel
Strand 6	F	194	196	anti-parallel
Strand 7	F	151	159	parallel
Strand 8	F	107	116	parallel
Strand 9	F	130	131	anti-parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	47	first strand
Strand 2	F	50	57	anti-parallel
Strand 3	F	60	65	anti-parallel
Strand 4	F	21	23	parallel
Strand 5	F	88	97	parallel
Strand 6	F	212	222	parallel
Strand 7	F	107	116	anti-parallel
Strand 8	F	130	131	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JP5