Analysis of interatomic Contacts of Structural Units in PDB entry:
4JPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JPF entry

There is 1 chain in PDB entry 4JPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3ALA 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4JPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 31Right-handed alpha
Helix 2
2
A
58 62Right-handed 310
Helix 3
3
A
64 69Right-handed alpha
Helix 4
4
A
72 90Right-handed alpha
Helix 5
5
A
97 99Right-handed 310
Helix 6
6
A
111 125Right-handed alpha
Helix 7
7
A
126 130Right-handed 310
Helix 8
8
A
141 152Right-handed alpha
Helix 9
9
A
162 164Right-handed 310
Helix 10
10
A
165 180Right-handed alpha
Helix 11
11
A
196 206Right-handed alpha
Helix 12
12
A
215 219Right-handed 310
Helix 13
13
A
244 250Right-handed alpha
Helix 14
14
A
277 292Right-handed alpha
Helix 15
15
A
294 298Right-handed 310
Helix 16
16
A
308 324Right-handed alpha
Helix 17
17
A
325 329Right-handed 310
Helix 18
18
A
335 340Right-handed alpha
Helix 19
19
A
342 344Right-handed 310
Helix 20
20
A
345 361Right-handed alpha
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There are 3 sheets in PDB entry 4JPF. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
101 106parallel
Strand 3
A
185 192parallel
Strand 4
A
235 243anti-parallel
Strand 5
A
6 14anti-parallel
Strand 6
A
256 265anti-parallel
Strand 7
A
403 410anti-parallel
Strand 8
A
392 399anti-parallel
Strand 9
A
300 302parallel
Strand 10
A
331 333parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
50 51anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
386 387anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il