Analysis of interatomic Contacts of Structural Units in PDB entry:
4JPH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JPH entry

There are 4 chains in PDB entry 4JPH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 46VAL 160
B
 LYS 50VAL 160
C
 LEU 60VAL 160
D
 LYS 50VAL 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4JPH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 54Right-handed alpha
Helix 2
2
A
55 63Right-handed 310
Helix 3
3
A
64 69Right-handed alpha
Helix 4
4
B
55 66Right-handed alpha
Helix 5
5
C
64 69Right-handed alpha
Helix 6
6
D
56 65Right-handed alpha
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There are 6 sheets in PDB entry 4JPH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 82first strand
Strand 2
A
90 107anti-parallel
Strand 3
B
90 106anti-parallel
Strand 4
B
72 82anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
90 107anti-parallel
Strand 3
B
90 106anti-parallel
Strand 4
B
117 120anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 136first strand
Strand 2
A
144 158anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 136first strand
Strand 2
B
144 158anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 82first strand
Strand 2
C
90 106anti-parallel
Strand 3
D
90 107anti-parallel
Strand 4
D
72 82anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 159first strand
Strand 2
C
117 136anti-parallel
Strand 3
C
90 106anti-parallel
Strand 4
D
90 107anti-parallel
Strand 5
D
116 135anti-parallel
Strand 6
D
145 159anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il