Analysis of interatomic Contacts of Structural Units in PDB entry:
4JPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JPJ entry

There are 4 chains in PDB entry 4JPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1ASP 170
B
 ASP 1THR 172
C
 ASP 1THR 174
D
 ASP 1THR 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4JPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
109 128Right-handed alpha
Helix 3
3
B
12 16Right-handed 310
Helix 4
4
B
109 128Right-handed alpha
Helix 5
5
B
160 164Right-handed 310
Helix 6
6
C
12 16Right-handed 310
Helix 7
7
C
109 128Right-handed alpha
Helix 8
8
C
161 164Right-handed 310
Helix 9
9
D
12 16Right-handed 310
Helix 10
10
D
109 128Right-handed alpha
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There are 8 sheets in PDB entry 4JPJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
17 26anti-parallel
Strand 3
A
87 99anti-parallel
Strand 4
A
104 108anti-parallel
Strand 5
A
2 8anti-parallel
Strand 6
A
155 158anti-parallel
Strand 7
A
147 150anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
87 99anti-parallel
Strand 3
A
17 26anti-parallel
Strand 4
A
35 40anti-parallel
Strand 5
A
131 134parallel
Strand 6
A
166 168anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
147 151anti-parallel
Strand 3
B
154 158anti-parallel
Strand 4
B
2 8anti-parallel
Strand 5
B
104 108anti-parallel
Strand 6
B
87 99anti-parallel
Strand 7
B
17 26anti-parallel
Strand 8
B
74 76first strand
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
17 26anti-parallel
Strand 3
B
87 99anti-parallel
Strand 4
B
35 40first strand
Strand 5
B
131 134parallel
Strand 6
B
166 168anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 64first strand
Strand 2
C
17 26anti-parallel
Strand 3
C
87 99anti-parallel
Strand 4
C
104 108anti-parallel
Strand 5
C
2 8anti-parallel
Strand 6
C
155 159anti-parallel
Strand 7
C
146 150anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 76first strand
Strand 2
C
87 99anti-parallel
Strand 3
C
17 26anti-parallel
Strand 4
C
35 40anti-parallel
Strand 5
C
131 134parallel
Strand 6
C
166 168anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 64first strand
Strand 2
D
17 26anti-parallel
Strand 3
D
87 101anti-parallel
Strand 4
D
104 108anti-parallel
Strand 5
D
2 8anti-parallel
Strand 6
D
155 158anti-parallel
Strand 7
D
147 150anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
74 76first strand
Strand 2
D
87 101anti-parallel
Strand 3
D
17 26anti-parallel
Strand 4
D
35 40anti-parallel
Strand 5
D
131 134parallel
Strand 6
D
166 168anti-parallel
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