Analysis of interatomic Contacts of Structural Units in PDB entry:
4JPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JPQ entry

There are 2 chains in PDB entry 4JPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 32GLU 250
B
 SER 33GLU 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4JPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 51Right-handed 310
Helix 2
2
A
52 60Right-handed alpha
Helix 3
3
A
113 117Right-handed 310
Helix 4
4
A
158 165Right-handed alpha
Helix 5
5
A
194 196Right-handed 310
Helix 6
6
A
240 244Right-handed 310
Helix 7
7
B
49 51Right-handed 310
Helix 8
8
B
52 60Right-handed alpha
Helix 9
9
B
113 117Right-handed 310
Helix 10
10
B
158 165Right-handed alpha
Helix 11
11
B
194 196Right-handed 310
Helix 12
12
B
240 244Right-handed 310
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There are 4 sheets in PDB entry 4JPQ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
80 87anti-parallel
Strand 3
A
36 41parallel
Strand 4
A
245 249parallel
Strand 5
A
208 216anti-parallel
Strand 6
A
91 105first strand
Strand 7
A
176 192anti-parallel
Strand 8
A
166 169anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 148first strand
Strand 2
A
132 138anti-parallel
Strand 3
A
119 125anti-parallel
Strand 4
A
208 216anti-parallel
Strand 5
A
245 249anti-parallel
Strand 6
A
36 41parallel
Strand 7
A
80 87parallel
Strand 8
A
225 227first strand
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
80 87anti-parallel
Strand 3
B
36 41parallel
Strand 4
B
245 249parallel
Strand 5
B
208 216anti-parallel
Strand 6
B
91 105first strand
Strand 7
B
176 192anti-parallel
Strand 8
B
166 169anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 148first strand
Strand 2
B
132 138anti-parallel
Strand 3
B
119 125anti-parallel
Strand 4
B
208 216anti-parallel
Strand 5
B
245 249anti-parallel
Strand 6
B
36 41parallel
Strand 7
B
80 87parallel
Strand 8
B
225 227first strand
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