Analysis of interatomic Contacts of Structural Units in PDB entry:
4JPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JPS entry

There are 2 chains in PDB entry 4JPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2THR 1061
B
 GLU 332LYS 592
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 4JPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 53Right-handed alpha
Helix 2
2
A
54 56Right-handed 310
Helix 3
3
A
58 62Right-handed 310
Helix 4
4
A
64 68Right-handed 310
Helix 5
5
A
88 92Right-handed 310
Helix 6
6
A
107 122Right-handed alpha
Helix 7
7
A
125 131Right-handed alpha
Helix 8
8
A
133 143Right-handed alpha
Helix 9
9
A
143 156Right-handed alpha
Helix 10
10
A
159 167Right-handed alpha
Helix 11
11
A
178 183Right-handed alpha
Helix 12
12
A
216 227Right-handed alpha
Helix 13
13
A
245 248Right-handed 310
Helix 14
14
A
266 269Right-handed 310
Helix 15
15
A
270 280Right-handed alpha
Helix 16
16
A
290 295Right-handed alpha
Helix 17
17
A
305 310Right-handed 310
Helix 18
18
A
328 330Right-handed 310
Helix 19
19
A
394 396Right-handed 310
Helix 20
20
A
488 493Right-handed alpha
Helix 21
21
A
526 537Right-handed alpha
Helix 22
22
A
544 554Right-handed alpha
Helix 23
23
A
557 563Right-handed 310
Helix 24
24
A
564 572Right-handed alpha
Helix 25
25
A
576 590Right-handed alpha
Helix 26
26
A
594 599Right-handed alpha
Helix 27
27
A
600 603Right-handed 310
Helix 28
28
A
608 623Right-handed alpha
Helix 29
29
A
624 639Right-handed alpha
Helix 30
30
A
640 642Right-handed 310
Helix 31
31
A
647 658Right-handed alpha
Helix 32
32
A
660 673Right-handed alpha
Helix 33
33
A
680 695Right-handed alpha
Helix 34
34
A
697 721Right-handed alpha
Helix 35
35
A
727 740Right-handed alpha
Helix 36
36
A
741 749Right-handed alpha
Helix 37
37
A
765 769Right-handed 310
Helix 38
38
A
789 793Right-handed 310
Helix 39
39
A
807 826Right-handed alpha
Helix 40
40
A
857 862Right-handed alpha
Helix 41
41
A
875 885Right-handed alpha
Helix 42
42
A
886 888Right-handed 310
Helix 43
43
A
889 912Right-handed alpha
Helix 44
44
A
941 946Right-handed alpha
Helix 45
45
A
957 965Right-handed alpha
Helix 46
46
A
974 994Right-handed alpha
Helix 47
47
A
994 1004Right-handed alpha
Helix 48
48
A
1015 1026Right-handed alpha
Helix 49
49
A
1031 1048Right-handed alpha
Helix 50
50
B
339 348Right-handed alpha
Helix 51
51
B
441 516Right-handed alpha
Helix 52
52
B
517 588Right-handed alpha
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There are 10 sheets in PDB entry 4JPS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
79 82anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 212first strand
Strand 2
A
189 198anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
484 485parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 341anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
439 444anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
371 372anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
401 413anti-parallel
Strand 4
A
416 428anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 753first strand
Strand 2
A
756 761anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 842anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 383first strand
Strand 2
B
368 374anti-parallel
Strand 3
B
354 359anti-parallel
Strand 4
B
426 427parallel
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