Analysis of interatomic Contacts of Structural Units in PDB entry:
4JPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JPY entry

There is 1 chain in PDB entry 4JPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 10LEU 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4JPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 18Right-handed alpha
Helix 2
2
A
37 55Right-handed alpha
Helix 3
3
A
60 70Right-handed alpha
Helix 4
4
A
79 92Right-handed alpha
Helix 5
5
A
103 113Right-handed alpha
Helix 6
6
A
135 144Right-handed alpha
Helix 7
7
A
145 148Right-handed 310
Helix 8
8
A
149 169Right-handed alpha
Helix 9
9
A
171 181Right-handed alpha
Helix 10
10
A
198 203Right-handed alpha
Helix 11
11
A
204 214Right-handed alpha
Helix 12
12
A
223 229Right-handed alpha
Helix 13
13
A
246 254Right-handed alpha
Helix 14
14
A
258 265Right-handed alpha
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There are 2 sheets in PDB entry 4JPY. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
115 119parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
187 190anti-parallel
Strand 3
A
240 244parallel
Strand 4
A
218 221parallel
Strand 5
A
282 283anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il