Analysis of interatomic Contacts of Structural Units in PDB entry:
4JQ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JQ9 entry

There are 3 chains in PDB entry 4JQ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LYS 472
B	SER 2	LYS 472
C	SER 2	TYR 374

There are107 helices in PDB entry 4JQ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	28	Right-handed alpha
Helix 2	2	A	42	49	Right-handed alpha
Helix 3	3	A	49	69	Right-handed alpha
Helix 4	4	A	70	72	Right-handed 310
Helix 5	5	A	82	108	Right-handed alpha
Helix 6	6	A	164	170	Right-handed alpha
Helix 7	7	A	184	197	Right-handed alpha
Helix 8	8	A	215	227	Right-handed alpha
Helix 9	9	A	277	280	Right-handed 310
Helix 10	10	A	281	286	Right-handed 310
Helix 11	11	A	312	316	Right-handed 310
Helix 12	12	A	320	336	Right-handed alpha
Helix 13	13	A	363	371	Right-handed alpha
Helix 14	14	A	384	390	Right-handed alpha
Helix 15	15	A	417	420	Right-handed 310
Helix 16	16	A	421	431	Right-handed alpha
Helix 17	17	A	434	441	Right-handed alpha
Helix 18	18	A	449	461	Right-handed alpha
Helix 19	19	B	15	28	Right-handed alpha
Helix 20	20	B	42	49	Right-handed alpha
Helix 21	21	B	49	69	Right-handed alpha
Helix 22	22	B	70	72	Right-handed 310
Helix 23	23	B	82	108	Right-handed alpha
Helix 24	24	B	164	171	Right-handed alpha
Helix 25	25	B	184	198	Right-handed alpha
Helix 26	26	B	215	227	Right-handed alpha
Helix 27	27	B	277	280	Right-handed 310
Helix 28	28	B	281	286	Right-handed 310
Helix 29	29	B	312	316	Right-handed 310
Helix 30	30	B	320	336	Right-handed alpha
Helix 31	31	B	363	371	Right-handed alpha
Helix 32	32	B	384	390	Right-handed alpha
Helix 33	33	B	417	420	Right-handed 310
Helix 34	34	B	421	432	Right-handed alpha
Helix 35	35	B	434	441	Right-handed alpha
Helix 36	36	B	449	461	Right-handed alpha
Helix 37	37	C	15	28	Right-handed alpha
Helix 38	38	C	42	49	Right-handed alpha
Helix 39	39	C	49	69	Right-handed alpha
Helix 40	40	C	70	72	Right-handed 310
Helix 41	41	C	82	108	Right-handed alpha
Helix 42	42	C	164	170	Right-handed alpha
Helix 43	43	C	184	197	Right-handed alpha
Helix 44	44	C	215	227	Right-handed alpha
Helix 45	45	C	277	280	Right-handed 310
Helix 46	46	C	281	286	Right-handed 310
Helix 47	47	C	312	316	Right-handed 310
Helix 48	48	C	320	336	Right-handed alpha
Helix 49	49	C	363	371	Right-handed alpha
Helix 50	50	C	384	390	Right-handed alpha
Helix 51	51	C	417	420	Right-handed 310
Helix 52	52	C	421	431	Right-handed alpha
Helix 53	53	C	434	441	Right-handed alpha
Helix 54	54	C	449	461	Right-handed alpha
Helix 55	55	D	15	28	Right-handed alpha
Helix 56	56	D	42	49	Right-handed alpha
Helix 57	57	D	49	69	Right-handed alpha
Helix 58	58	D	70	72	Right-handed 310
Helix 59	59	D	82	108	Right-handed alpha
Helix 60	60	D	164	170	Right-handed alpha
Helix 61	61	D	184	198	Right-handed alpha
Helix 62	62	D	215	227	Right-handed alpha
Helix 63	63	D	277	280	Right-handed 310
Helix 64	64	D	281	286	Right-handed 310
Helix 65	65	D	312	316	Right-handed 310
Helix 66	66	D	320	336	Right-handed alpha
Helix 67	67	D	363	371	Right-handed alpha
Helix 68	68	D	384	390	Right-handed alpha
Helix 69	69	D	417	420	Right-handed 310
Helix 70	70	D	421	431	Right-handed alpha
Helix 71	71	D	434	441	Right-handed alpha
Helix 72	72	D	449	461	Right-handed alpha
Helix 73	73	E	15	28	Right-handed alpha
Helix 74	74	E	42	49	Right-handed alpha
Helix 75	75	E	49	69	Right-handed alpha
Helix 76	76	E	70	72	Right-handed 310
Helix 77	77	E	82	108	Right-handed alpha
Helix 78	78	E	164	171	Right-handed alpha
Helix 79	79	E	184	197	Right-handed alpha
Helix 80	80	E	215	227	Right-handed alpha
Helix 81	81	E	277	280	Right-handed 310
Helix 82	82	E	281	286	Right-handed 310
Helix 83	83	E	312	316	Right-handed 310
Helix 84	84	E	320	336	Right-handed alpha
Helix 85	85	E	363	371	Right-handed alpha
Helix 86	86	E	384	390	Right-handed alpha
Helix 87	87	E	417	420	Right-handed 310
Helix 88	88	E	421	431	Right-handed alpha
Helix 89	89	E	434	441	Right-handed alpha
Helix 90	90	E	449	461	Right-handed alpha
Helix 91	91	F	15	28	Right-handed alpha
Helix 92	92	F	42	49	Right-handed alpha
Helix 93	93	F	49	69	Right-handed alpha
Helix 94	94	F	70	72	Right-handed 310
Helix 95	95	F	82	108	Right-handed alpha
Helix 96	96	F	164	170	Right-handed alpha
Helix 97	97	F	184	197	Right-handed alpha
Helix 98	98	F	215	227	Right-handed alpha
Helix 99	99	F	281	286	Right-handed 310
Helix 100	100	F	312	316	Right-handed 310
Helix 101	101	F	320	336	Right-handed alpha
Helix 102	102	F	363	370	Right-handed alpha
Helix 103	103	F	384	390	Right-handed alpha
Helix 104	104	F	417	420	Right-handed 310
Helix 105	105	F	421	432	Right-handed alpha
Helix 106	106	F	434	441	Right-handed alpha
Helix 107	107	F	449	461	Right-handed alpha

There are 39 sheets in PDB entry 4JQ9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	310	first strand
Strand 2	A	132	143	parallel
Strand 3	A	124	129	anti-parallel
Strand 4	A	111	121	anti-parallel
Strand 5	A	32	36	parallel
Strand 6	A	3	12	parallel
Strand 7	A	132	143	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	B	80	81	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	B	74	75	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	149	first strand
Strand 2	A	273	275	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	266	269	parallel
Strand 3	A	177	181	parallel
Strand 4	A	200	205	parallel
Strand 5	A	230	234	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	244	first strand
Strand 2	A	247	254	anti-parallel
Strand 3	A	262	264	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	351	first strand
Strand 2	A	356	361	anti-parallel
Strand 3	A	408	415	anti-parallel
Strand 4	A	396	402	anti-parallel
Strand 5	A	374	380	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	310	first strand
Strand 2	B	132	143	parallel
Strand 3	B	124	129	anti-parallel
Strand 4	B	111	121	anti-parallel
Strand 5	B	32	36	parallel
Strand 6	B	3	12	parallel
Strand 7	B	132	143	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	149	first strand
Strand 2	B	273	275	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	266	269	parallel
Strand 3	B	177	181	parallel
Strand 4	B	200	204	parallel
Strand 5	B	230	233	parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	244	first strand
Strand 2	B	247	254	anti-parallel
Strand 3	B	262	264	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	351	first strand
Strand 2	B	356	361	anti-parallel
Strand 3	B	408	415	anti-parallel
Strand 4	B	396	402	anti-parallel
Strand 5	B	374	380	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	32	36	parallel
Strand 3	C	3	12	parallel
Strand 4	C	132	143	parallel
Strand 5	C	124	129	anti-parallel
Strand 6	C	116	121	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	32	36	parallel
Strand 3	C	3	12	parallel
Strand 4	C	132	143	parallel
Strand 5	C	308	310	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	E	80	81	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	81	first strand
Strand 2	E	74	75	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	149	first strand
Strand 2	C	273	275	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	266	269	parallel
Strand 3	C	177	181	parallel
Strand 4	C	200	204	parallel
Strand 5	C	231	233	parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	244	first strand
Strand 2	C	247	254	anti-parallel
Strand 3	C	262	264	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	351	first strand
Strand 2	C	356	361	anti-parallel
Strand 3	C	408	415	anti-parallel
Strand 4	C	396	402	anti-parallel
Strand 5	C	374	380	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	114	first strand
Strand 2	D	32	36	parallel
Strand 3	D	4	12	parallel
Strand 4	D	132	143	parallel
Strand 5	D	124	129	anti-parallel
Strand 6	D	116	121	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	114	first strand
Strand 2	D	32	36	parallel
Strand 3	D	4	12	parallel
Strand 4	D	132	143	parallel
Strand 5	D	308	310	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	75	first strand
Strand 2	F	80	81	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	F	74	75	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	149	first strand
Strand 2	D	273	275	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	266	269	parallel
Strand 3	D	177	181	parallel
Strand 4	D	200	205	parallel
Strand 5	D	230	234	parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	244	first strand
Strand 2	D	247	254	anti-parallel
Strand 3	D	262	264	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	351	first strand
Strand 2	D	356	361	anti-parallel
Strand 3	D	408	415	anti-parallel
Strand 4	D	396	402	anti-parallel
Strand 5	D	374	380	anti-parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	132	137	parallel
Strand 3	E	124	129	anti-parallel
Strand 4	E	111	121	anti-parallel
Strand 5	E	32	36	parallel
Strand 6	E	9	12	parallel
Strand 7	E	140	143	parallel
Strand 8	E	308	310	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	149	first strand
Strand 2	E	273	275	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	163	first strand
Strand 2	E	266	269	parallel
Strand 3	E	177	181	parallel
Strand 4	E	200	205	parallel
Strand 5	E	230	234	parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	244	first strand
Strand 2	E	247	254	anti-parallel
Strand 3	E	262	264	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	349	351	first strand
Strand 2	E	356	361	anti-parallel
Strand 3	E	408	415	anti-parallel
Strand 4	E	396	402	anti-parallel
Strand 5	E	374	380	anti-parallel

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There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	114	first strand
Strand 2	F	32	36	parallel
Strand 3	F	4	12	parallel
Strand 4	F	132	143	parallel
Strand 5	F	124	129	anti-parallel
Strand 6	F	116	121	anti-parallel

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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	114	first strand
Strand 2	F	32	36	parallel
Strand 3	F	4	12	parallel
Strand 4	F	132	143	parallel
Strand 5	F	308	310	parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	149	first strand
Strand 2	F	273	275	anti-parallel

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There are 5 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	163	first strand
Strand 2	F	266	269	parallel
Strand 3	F	177	181	parallel
Strand 4	F	200	204	parallel
Strand 5	F	231	233	parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	244	first strand
Strand 2	F	247	254	anti-parallel
Strand 3	F	262	264	anti-parallel

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There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	349	351	first strand
Strand 2	F	356	361	anti-parallel
Strand 3	F	408	415	anti-parallel
Strand 4	F	396	402	anti-parallel
Strand 5	F	374	380	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JQ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JQ9