Analysis of interatomic Contacts of Structural Units in PDB entry:
4JQE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JQE entry

There is 1 chain in PDB entry 4JQE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 3GLU 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4JQE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 19Right-handed alpha
Helix 2
2
A
20 25Right-handed alpha
Helix 3
3
A
75 92Right-handed alpha
Helix 4
4
A
95 99Right-handed 310
Helix 5
5
A
102 106Right-handed 310
Helix 6
6
A
111 116Right-handed alpha
Helix 7
7
A
128 133Right-handed 310
Helix 8
8
A
159 164Right-handed alpha
Helix 9
9
A
165 167Right-handed 310
Helix 10
10
A
168 189Right-handed alpha
Helix 11
11
A
197 199Right-handed 310
Helix 12
12
A
205 208Right-handed 310
Helix 13
13
A
233 237Right-handed 310
Helix 14
14
A
238 243Right-handed alpha
Helix 15
15
A
250 267Right-handed alpha
Helix 16
16
A
276 289Right-handed alpha
Helix 17
17
A
289 300Right-handed alpha
Helix 18
18
A
318 323Right-handed 310
Helix 19
19
A
327 332Right-handed alpha
Helix 20
20
A
333 344Right-handed alpha
Helix 21
21
A
353 359Right-handed alpha
Helix 22
22
A
360 362Right-handed 310
Helix 23
23
A
363 368Right-handed alpha
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There are 3 sheets in PDB entry 4JQE. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
136 141parallel
Strand 3
A
148 153anti-parallel
Strand 4
A
65 71anti-parallel
Strand 5
A
52 59anti-parallel
Strand 6
A
40 48anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
219 220anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
209 212anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il