Analysis of interatomic Contacts of Structural Units in PDB entry:
4JQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JQP entry

There are 2 chains in PDB entry 4JQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 13ARG 342
B
 ASN 13ARG 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4JQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 38Right-handed alpha
Helix 2
2
A
39 46Right-handed alpha
Helix 3
3
A
53 65Right-handed alpha
Helix 4
4
A
75 79Right-handed 310
Helix 5
5
A
104 124Right-handed alpha
Helix 6
6
A
136 143Right-handed alpha
Helix 7
7
A
149 159Right-handed alpha
Helix 8
8
A
182 190Right-handed alpha
Helix 9
9
A
191 209Right-handed alpha
Helix 10
10
A
222 227Right-handed 310
Helix 11
11
A
234 240Right-handed alpha
Helix 12
12
A
240 250Right-handed alpha
Helix 13
13
A
259 270Right-handed alpha
Helix 14
14
A
279 289Right-handed alpha
Helix 15
15
A
325 339Right-handed alpha
Helix 16
16
B
28 38Right-handed alpha
Helix 17
17
B
39 46Right-handed alpha
Helix 18
18
B
53 65Right-handed alpha
Helix 19
19
B
75 79Right-handed 310
Helix 20
20
B
104 124Right-handed alpha
Helix 21
21
B
136 143Right-handed alpha
Helix 22
22
B
149 159Right-handed alpha
Helix 23
23
B
182 190Right-handed alpha
Helix 24
24
B
191 209Right-handed alpha
Helix 25
25
B
222 227Right-handed 310
Helix 26
26
B
234 240Right-handed alpha
Helix 27
27
B
240 251Right-handed alpha
Helix 28
28
B
259 270Right-handed alpha
Helix 29
29
B
279 289Right-handed alpha
Helix 30
30
B
325 339Right-handed alpha
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There are 2 sheets in PDB entry 4JQP. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
85 90parallel
Strand 3
A
47 52parallel
Strand 4
A
17 21parallel
Strand 5
A
129 132parallel
Strand 6
A
305 309parallel
Strand 7
A
296 300anti-parallel
Strand 8
A
164 169anti-parallel
Strand 9
A
172 176anti-parallel
Strand 10
A
274 277parallel
Strand 11
A
215 219parallel
Strand 12
A
253 258parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
85 90parallel
Strand 3
B
47 52parallel
Strand 4
B
17 21parallel
Strand 5
B
129 132parallel
Strand 6
B
305 309parallel
Strand 7
B
296 300anti-parallel
Strand 8
B
164 169anti-parallel
Strand 9
B
172 176anti-parallel
Strand 10
B
274 277parallel
Strand 11
B
215 219parallel
Strand 12
B
253 258parallel
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