Analysis of interatomic Contacts of Structural Units in PDB entry:
4JQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JQR entry

There is 1 chain in PDB entry 4JQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 26LYS 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 4JQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
145 155Right-handed alpha
Helix 2
2
A
209 212Right-handed 310
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There are 3 sheets in PDB entry 4JQR. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
236 246anti-parallel
Strand 3
A
112 116anti-parallel
Strand 4
A
80 88anti-parallel
Strand 5
A
67 75anti-parallel
Strand 6
A
126 130anti-parallel
Strand 7
A
216 223anti-parallel
Strand 8
A
167 175anti-parallel
Strand 9
A
181 191anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
67 75anti-parallel
Strand 3
A
80 88anti-parallel
Strand 4
A
112 116anti-parallel
Strand 5
A
236 246anti-parallel
Strand 6
A
135 144anti-parallel
Strand 7
A
204 207anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
A
230 231anti-parallel
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