Analysis of interatomic Contacts of Structural Units in PDB entry:
4JQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JQS entry

There are 3 chains in PDB entry 4JQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 23LYS 267
B
 GLY 23LYS 267
C
 GLY 23LYS 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 4JQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 63Right-handed alpha
Helix 2
2
A
75 79Right-handed 310
Helix 3
3
A
80 85Right-handed alpha
Helix 4
4
A
99 112Right-handed alpha
Helix 5
5
A
121 124Right-handed 310
Helix 6
6
A
131 139Right-handed alpha
Helix 7
7
A
185 189Right-handed 310
Helix 8
8
A
200 203Right-handed 310
Helix 9
9
A
241 258Right-handed alpha
Helix 10
10
A
263 267Right-handed 310
Helix 11
11
B
45 63Right-handed alpha
Helix 12
12
B
75 79Right-handed 310
Helix 13
13
B
80 85Right-handed alpha
Helix 14
14
B
99 112Right-handed alpha
Helix 15
15
B
121 124Right-handed 310
Helix 16
16
B
131 139Right-handed alpha
Helix 17
17
B
185 189Right-handed 310
Helix 18
18
B
200 203Right-handed 310
Helix 19
19
B
241 258Right-handed alpha
Helix 20
20
B
263 267Right-handed 310
Helix 21
21
C
45 63Right-handed alpha
Helix 22
22
C
75 79Right-handed 310
Helix 23
23
C
80 85Right-handed alpha
Helix 24
24
C
99 112Right-handed alpha
Helix 25
25
C
121 124Right-handed 310
Helix 26
26
C
131 139Right-handed alpha
Helix 27
27
C
185 189Right-handed 310
Helix 28
28
C
200 203Right-handed 310
Helix 29
29
C
241 258Right-handed alpha
Helix 30
30
C
263 267Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 4JQS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
C
210 211anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
35 39parallel
Strand 3
A
89 92parallel
Strand 4
A
115 119parallel
Strand 5
A
226 230parallel
Strand 6
A
217 222anti-parallel
Strand 7
A
192 198anti-parallel
Strand 8
A
151 157anti-parallel
Strand 9
A
171 177anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
180 183anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
B
26 27anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
35 39parallel
Strand 3
B
89 92parallel
Strand 4
B
115 119parallel
Strand 5
B
226 230parallel
Strand 6
B
217 222anti-parallel
Strand 7
B
192 198anti-parallel
Strand 8
B
151 157anti-parallel
Strand 9
B
171 177anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 146first strand
Strand 2
B
180 183anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 211first strand
Strand 2
C
26 27anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 73first strand
Strand 2
C
35 39parallel
Strand 3
C
89 92parallel
Strand 4
C
115 119parallel
Strand 5
C
226 230parallel
Strand 6
C
217 222anti-parallel
Strand 7
C
192 198anti-parallel
Strand 8
C
151 157anti-parallel
Strand 9
C
171 177anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 146first strand
Strand 2
C
180 183anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il