Analysis of interatomic Contacts of Structural Units in PDB entry:
4JQT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JQT entry

There are 2 chains in PDB entry 4JQT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LYS 449
B
 GLY 0LYS 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4JQT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
98 102Right-handed 310
Helix 2
2
A
132 142Right-handed 310
Helix 3
3
A
210 215Right-handed alpha
Helix 4
4
A
217 221Right-handed 310
Helix 5
5
A
233 239Right-handed alpha
Helix 6
6
A
342 347Right-handed 310
Helix 7
7
A
403 411Right-handed alpha
Helix 8
8
B
132 142Right-handed 310
Helix 9
9
B
191 195Right-handed 310
Helix 10
10
B
210 215Right-handed alpha
Helix 11
11
B
217 221Right-handed 310
Helix 12
12
B
233 239Right-handed alpha
Helix 13
13
B
342 347Right-handed 310
Helix 14
14
B
403 412Right-handed alpha
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There are 12 sheets in PDB entry 4JQT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
198 207anti-parallel
Strand 3
A
49 53anti-parallel
Strand 4
A
42 46anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
198 207anti-parallel
Strand 3
A
72 80anti-parallel
Strand 4
A
149 156anti-parallel
Strand 5
A
159 164anti-parallel
Strand 6
A
167 173anti-parallel
Strand 7
A
225 226parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
61 65anti-parallel
Strand 3
A
181 186anti-parallel
Strand 4
A
86 92anti-parallel
Strand 5
A
105 110anti-parallel
Strand 6
A
121 124anti-parallel
Strand 7
A
128 131anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
438 447anti-parallel
Strand 3
A
272 275anti-parallel
Strand 4
A
266 269anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
438 447anti-parallel
Strand 3
A
298 306anti-parallel
Strand 4
A
376 383anti-parallel
Strand 5
A
386 391anti-parallel
Strand 6
A
394 400anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
289 291anti-parallel
Strand 3
A
428 431anti-parallel
Strand 4
A
311 319anti-parallel
Strand 5
A
330 337anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
198 207anti-parallel
Strand 3
B
49 53anti-parallel
Strand 4
B
42 46anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
198 207anti-parallel
Strand 3
B
72 80anti-parallel
Strand 4
B
149 156anti-parallel
Strand 5
B
159 164anti-parallel
Strand 6
B
167 173anti-parallel
Strand 7
B
225 226parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
61 65anti-parallel
Strand 3
B
181 186anti-parallel
Strand 4
B
86 92anti-parallel
Strand 5
B
105 110anti-parallel
Strand 6
B
121 124anti-parallel
Strand 7
B
128 131anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 243first strand
Strand 2
B
438 447anti-parallel
Strand 3
B
272 275anti-parallel
Strand 4
B
266 269anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 243first strand
Strand 2
B
438 447anti-parallel
Strand 3
B
298 306anti-parallel
Strand 4
B
376 383anti-parallel
Strand 5
B
386 391anti-parallel
Strand 6
B
394 400anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 255first strand
Strand 2
B
289 291anti-parallel
Strand 3
B
428 431anti-parallel
Strand 4
B
311 319anti-parallel
Strand 5
B
330 337anti-parallel
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