Analysis of interatomic Contacts of Structural Units in PDB entry:
4JQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JQY entry

There are 2 chains in PDB entry 4JQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 32HIS 277
B
 ASN 32TYR 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4JQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 36Right-handed 310
Helix 2
2
A
66 81Right-handed alpha
Helix 3
3
A
92 105Right-handed alpha
Helix 4
4
A
135 141Right-handed alpha
Helix 5
5
A
148 152Right-handed 310
Helix 6
6
A
213 227Right-handed alpha
Helix 7
7
A
231 250Right-handed alpha
Helix 8
8
B
32 36Right-handed 310
Helix 9
9
B
68 80Right-handed alpha
Helix 10
10
B
92 105Right-handed alpha
Helix 11
11
B
107 109Right-handed 310
Helix 12
12
B
135 141Right-handed alpha
Helix 13
13
B
142 144Right-handed 310
Helix 14
14
B
148 152Right-handed 310
Helix 15
15
B
213 227Right-handed alpha
Helix 16
16
B
231 250Right-handed alpha
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There are 2 sheets in PDB entry 4JQY. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
43 51parallel
Strand 3
A
111 121parallel
Strand 4
A
156 163parallel
Strand 5
A
193 199parallel
Strand 6
A
264 267anti-parallel
Strand 7
B
264 267anti-parallel
Strand 8
B
193 198anti-parallel
Strand 9
B
156 163parallel
Strand 10
B
111 121parallel
Strand 11
B
43 52parallel
Strand 12
B
84 89parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
133 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il